miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 3' -50.7 NC_001806.1 + 26571 0.66 0.996767
Target:  5'- -aGugGCuCCACgUUCCCGAGucCGCGUCc -3'
miRNA:   3'- agCuuUG-GGUGaAAGGGCUU--GUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 23481 0.66 0.996767
Target:  5'- gCGcAGGCCCGCccgcgcCCCGuggccguguCGCGCCg -3'
miRNA:   3'- aGC-UUUGGGUGaaa---GGGCuu-------GUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 121907 0.66 0.996767
Target:  5'- aCGAGuugcCCCACcguugCCCGGGCcguUGCCc -3'
miRNA:   3'- aGCUUu---GGGUGaaa--GGGCUUGu--GCGG- -5'
5949 3' -50.7 NC_001806.1 + 139558 0.66 0.996767
Target:  5'- -gGGAGCgCCACgagCgCGAugACGUCa -3'
miRNA:   3'- agCUUUG-GGUGaaaGgGCUugUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 801 0.66 0.996767
Target:  5'- -aGAGAUCCAaacccUCCGGGgGCGCCc -3'
miRNA:   3'- agCUUUGGGUgaaa-GGGCUUgUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 35180 0.66 0.996767
Target:  5'- -gGGGugCCAgUcccaUUCCCGAAgGCGUa -3'
miRNA:   3'- agCUUugGGUgA----AAGGGCUUgUGCGg -5'
5949 3' -50.7 NC_001806.1 + 66740 0.66 0.996767
Target:  5'- -aGAAACgCCGCg--CCCGGGCcccccaGCCc -3'
miRNA:   3'- agCUUUG-GGUGaaaGGGCUUGug----CGG- -5'
5949 3' -50.7 NC_001806.1 + 70992 0.66 0.996767
Target:  5'- cCGAGagguaaugGCgCAUgcgCCCGAGgACGCCc -3'
miRNA:   3'- aGCUU--------UGgGUGaaaGGGCUUgUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 102667 0.66 0.996767
Target:  5'- gCGcuGGCCCACauacagCCGGccGCACGCCu -3'
miRNA:   3'- aGCu-UUGGGUGaaag--GGCU--UGUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 106936 0.66 0.996767
Target:  5'- gUCGGGuUuuGCUUUCgUGAACGcCGCCc -3'
miRNA:   3'- -AGCUUuGggUGAAAGgGCUUGU-GCGG- -5'
5949 3' -50.7 NC_001806.1 + 117687 0.66 0.996767
Target:  5'- -aGAAGCUCGggg-CCCGAGCccGCGUCg -3'
miRNA:   3'- agCUUUGGGUgaaaGGGCUUG--UGCGG- -5'
5949 3' -50.7 NC_001806.1 + 30867 0.66 0.99655
Target:  5'- gCGggGgCCGaggaagugugCCCGGaagACGCGCCa -3'
miRNA:   3'- aGCuuUgGGUgaaa------GGGCU---UGUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 133290 0.66 0.996202
Target:  5'- gCGgcACCCACUgugccuggccCUCGAGgGCGUCu -3'
miRNA:   3'- aGCuuUGGGUGAaa--------GGGCUUgUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 135001 0.66 0.996202
Target:  5'- cCGAuGCCCcCgc-CCUGGuccgGCGCGCCu -3'
miRNA:   3'- aGCUuUGGGuGaaaGGGCU----UGUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 150903 0.66 0.996202
Target:  5'- cUCGGGcCCCAggcacggCCCGAugACcGCCu -3'
miRNA:   3'- -AGCUUuGGGUgaaa---GGGCUugUG-CGG- -5'
5949 3' -50.7 NC_001806.1 + 19117 0.66 0.996202
Target:  5'- -gGggGCCCgggGCUgcguUUCCCGggUAgaccggaccCGCCc -3'
miRNA:   3'- agCuuUGGG---UGA----AAGGGCuuGU---------GCGG- -5'
5949 3' -50.7 NC_001806.1 + 20052 0.66 0.996202
Target:  5'- gCGAcuCCCGC--UCCCGGucCGCGUg -3'
miRNA:   3'- aGCUuuGGGUGaaAGGGCUu-GUGCGg -5'
5949 3' -50.7 NC_001806.1 + 43746 0.66 0.996202
Target:  5'- cCGAGgcGCCCucCUUggggcaCCCccACACGCCg -3'
miRNA:   3'- aGCUU--UGGGu-GAAa-----GGGcuUGUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 77153 0.66 0.996202
Target:  5'- cUCGggGggCGCguggCCC-AACACGCCg -3'
miRNA:   3'- -AGCuuUggGUGaaa-GGGcUUGUGCGG- -5'
5949 3' -50.7 NC_001806.1 + 106073 0.66 0.996202
Target:  5'- gCGGGACCCcggccagcuGCUUuacaUCCCGAAgACcuaccugcucgGCCg -3'
miRNA:   3'- aGCUUUGGG---------UGAA----AGGGCUUgUG-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.