Results 21 - 40 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 10592 | 0.67 | 0.542904 |
Target: 5'- aCAGGCCGcUGUCCGUCUcuCGGaccCCGUg -3' miRNA: 3'- -GUCCGGC-AUAGGCAGGccGCCc--GGCA- -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 30763 | 0.67 | 0.575329 |
Target: 5'- gGGGCCGcGUCCuccUCCgcuuccgccuccucgGGCgGGGCCGUc -3' miRNA: 3'- gUCCGGCaUAGGc--AGG---------------CCG-CCCGGCA- -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 42638 | 0.67 | 0.571488 |
Target: 5'- -cGGCgGcGUCgCGUCCGGUgcggGGGCUGg -3' miRNA: 3'- guCCGgCaUAG-GCAGGCCG----CCCGGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 101837 | 0.67 | 0.567654 |
Target: 5'- aGGGCgGUGaggcgcaccagcgCCGcCUGGCGGGCCc- -3' miRNA: 3'- gUCCGgCAUa------------GGCaGGCCGCCCGGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 54651 | 0.67 | 0.567654 |
Target: 5'- uGGGCCGUAacggccgacuuagCCG-CCGGUgagGGGUCGUc -3' miRNA: 3'- gUCCGGCAUa------------GGCaGGCCG---CCCGGCA- -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 15703 | 0.67 | 0.561915 |
Target: 5'- cCAGGCCG-GUCgGguguaCGGCGGGCg-- -3' miRNA: 3'- -GUCCGGCaUAGgCag---GCCGCCCGgca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 76638 | 0.67 | 0.552385 |
Target: 5'- aAGGUgGUcgCCGUcCCGGCGaccguGGCCa- -3' miRNA: 3'- gUCCGgCAuaGGCA-GGCCGC-----CCGGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 64819 | 0.67 | 0.542904 |
Target: 5'- gUAGGCCGUGcCCGUucccagacguggCCGG-GGGuCCGa -3' miRNA: 3'- -GUCCGGCAUaGGCA------------GGCCgCCC-GGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 3325 | 0.68 | 0.457908 |
Target: 5'- gGGGCCcgcggGUCCcUCCggccgcggggggcuGGCGGGCCGg -3' miRNA: 3'- gUCCGGca---UAGGcAGG--------------CCGCCCGGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 105087 | 0.68 | 0.469383 |
Target: 5'- aCGGuGCgGUAUCUGcagggCGGCGGGUCGUg -3' miRNA: 3'- -GUC-CGgCAUAGGCag---GCCGCCCGGCA- -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 87893 | 0.68 | 0.469383 |
Target: 5'- -cGGCCGUAcCCGUCCaGgGGGaCCu- -3' miRNA: 3'- guCCGGCAUaGGCAGGcCgCCC-GGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 89496 | 0.68 | 0.469383 |
Target: 5'- aGGGCCuUGUuuGUCUGGCGGauCCGg -3' miRNA: 3'- gUCCGGcAUAggCAGGCCGCCc-GGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 4442 | 0.68 | 0.478309 |
Target: 5'- gGGGCgGcGUCCGcCCGG-GGGCUGc -3' miRNA: 3'- gUCCGgCaUAGGCaGGCCgCCCGGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 21950 | 0.68 | 0.478309 |
Target: 5'- aCGGGCCcuucacggCCGggcagccCCGGCGGGUCGa -3' miRNA: 3'- -GUCCGGcaua----GGCa------GGCCGCCCGGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 5514 | 0.68 | 0.487319 |
Target: 5'- gAGGCCGccggccccCCGcccccCCGGCGGGCCc- -3' miRNA: 3'- gUCCGGCaua-----GGCa----GGCCGCCCGGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 4324 | 0.68 | 0.487319 |
Target: 5'- -cGGCCGgccaCCG-CCGcGCGGGCCc- -3' miRNA: 3'- guCCGGCaua-GGCaGGC-CGCCCGGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 4816 | 0.68 | 0.496407 |
Target: 5'- aAGGCgGggGUCCGgggCGGCGaGGCCGc -3' miRNA: 3'- gUCCGgCa-UAGGCag-GCCGC-CCGGCa -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 20687 | 0.68 | 0.505571 |
Target: 5'- gGGGUCGUGcauaauggaauUCCGUUCggGGUGGGCCc- -3' miRNA: 3'- gUCCGGCAU-----------AGGCAGG--CCGCCCGGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 46092 | 0.68 | 0.505571 |
Target: 5'- gGGGCgGU-UuuGUCCGGCccgGGGCCu- -3' miRNA: 3'- gUCCGgCAuAggCAGGCCG---CCCGGca -5' |
|||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 33054 | 0.69 | 0.443131 |
Target: 5'- cCGGGCCGggaacCCGgaaaagccUCCGGgGGGCCu- -3' miRNA: 3'- -GUCCGGCaua--GGC--------AGGCCgCCCGGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home