miRNA display CGI


Results 41 - 60 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 64819 0.67 0.542904
Target:  5'- gUAGGCCGUGcCCGUucccagacguggCCGG-GGGuCCGa -3'
miRNA:   3'- -GUCCGGCAUaGGCA------------GGCCgCCC-GGCa -5'
5949 5' -63.1 NC_001806.1 + 69646 0.66 0.610113
Target:  5'- -uGGCgCGUAUCauggGUCCGGCcGuGCCGa -3'
miRNA:   3'- guCCG-GCAUAGg---CAGGCCGcC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 74883 0.71 0.318602
Target:  5'- gCGGGCC---UCCcugCCGGCGGGCUGg -3'
miRNA:   3'- -GUCCGGcauAGGca-GGCCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 76638 0.67 0.552385
Target:  5'- aAGGUgGUcgCCGUcCCGGCGaccguGGCCa- -3'
miRNA:   3'- gUCCGgCAuaGGCA-GGCCGC-----CCGGca -5'
5949 5' -63.1 NC_001806.1 + 77131 0.69 0.451791
Target:  5'- gCGGGCCGgggCCGUggaggagcUCGGgGGGCgCGUg -3'
miRNA:   3'- -GUCCGGCauaGGCA--------GGCCgCCCG-GCA- -5'
5949 5' -63.1 NC_001806.1 + 78810 0.67 0.524111
Target:  5'- --uGCCGUGU-CGUCCGacaucgagacGUGGGCCGUc -3'
miRNA:   3'- gucCGGCAUAgGCAGGC----------CGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 82004 0.73 0.260388
Target:  5'- aCAGGauCCGUcucGUCCGUCCGGCaucuucgGGGCCc- -3'
miRNA:   3'- -GUCC--GGCA---UAGGCAGGCCG-------CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 87893 0.68 0.469383
Target:  5'- -cGGCCGUAcCCGUCCaGgGGGaCCu- -3'
miRNA:   3'- guCCGGCAUaGGCAGGcCgCCC-GGca -5'
5949 5' -63.1 NC_001806.1 + 89266 0.7 0.39323
Target:  5'- -cGGCUGgcUCCGcgagggCCGGCGGGCg-- -3'
miRNA:   3'- guCCGGCauAGGCa-----GGCCGCCCGgca -5'
5949 5' -63.1 NC_001806.1 + 89496 0.68 0.469383
Target:  5'- aGGGCCuUGUuuGUCUGGCGGauCCGg -3'
miRNA:   3'- gUCCGGcAUAggCAGGCCGCCc-GGCa -5'
5949 5' -63.1 NC_001806.1 + 94388 0.66 0.581101
Target:  5'- uCAGGCUGgauaCGUauGGCGGGaCCGUc -3'
miRNA:   3'- -GUCCGGCauagGCAggCCGCCC-GGCA- -5'
5949 5' -63.1 NC_001806.1 + 95050 0.66 0.590746
Target:  5'- -uGGCCGUggaacuggcgcuGUUCGggCGGCGGGCgGa -3'
miRNA:   3'- guCCGGCA------------UAGGCagGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 99910 0.67 0.524111
Target:  5'- uCAGcGCCGUgauggucucGUUgGUCCcgggagaauGGCGGGCCGc -3'
miRNA:   3'- -GUC-CGGCA---------UAGgCAGG---------CCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 101837 0.67 0.567654
Target:  5'- aGGGCgGUGaggcgcaccagcgCCGcCUGGCGGGCCc- -3'
miRNA:   3'- gUCCGgCAUa------------GGCaGGCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 102893 0.66 0.610113
Target:  5'- uGGuGUCGUAU-CGUagCGGCGGGUCGUu -3'
miRNA:   3'- gUC-CGGCAUAgGCAg-GCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 105087 0.68 0.469383
Target:  5'- aCGGuGCgGUAUCUGcagggCGGCGGGUCGUg -3'
miRNA:   3'- -GUC-CGgCAUAGGCag---GCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 113680 0.66 0.600419
Target:  5'- -uGGCCGUGUaCCGggacCUGGUGGcGCaCGUc -3'
miRNA:   3'- guCCGGCAUA-GGCa---GGCCGCC-CG-GCA- -5'
5949 5' -63.1 NC_001806.1 + 124497 0.75 0.197689
Target:  5'- -cGGUCGgacgCCGucucgcUCCGGCGGGCCGUc -3'
miRNA:   3'- guCCGGCaua-GGC------AGGCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 140885 0.67 0.533478
Target:  5'- aGGGCCc-GUCgGUacagGGCGGGCCGUc -3'
miRNA:   3'- gUCCGGcaUAGgCAgg--CCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 143622 0.73 0.24042
Target:  5'- gGGGCCGUuaucuccagcgccCCGUCCGGCGcGCCGc -3'
miRNA:   3'- gUCCGGCAua-----------GGCAGGCCGCcCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.