Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 29446 | 0.72 | 0.291877 |
Target: 5'- gAGGCCGaggaggCCGUCagGGCGGGCaCGg -3' miRNA: 3'- gUCCGGCaua---GGCAGg-CCGCCCG-GCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 24848 | 0.67 | 0.514807 |
Target: 5'- aCGGGCCGcagcggcaCCGUgCUGGCggcggcggGGGCCGUg -3' miRNA: 3'- -GUCCGGCaua-----GGCA-GGCCG--------CCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 24511 | 0.72 | 0.285476 |
Target: 5'- cCGGGCCGUG-CUG-CCGGCGcuggacGGCCGg -3' miRNA: 3'- -GUCCGGCAUaGGCaGGCCGC------CCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 23956 | 0.72 | 0.291877 |
Target: 5'- gGGGCCGccggagugGUCCGccgagCgCGGCGGGCUGUc -3' miRNA: 3'- gUCCGGCa-------UAGGCa----G-GCCGCCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 23503 | 0.7 | 0.39243 |
Target: 5'- -uGGCCGUGUCgCG-CCGGCccgccgaGGGCCc- -3' miRNA: 3'- guCCGGCAUAG-GCaGGCCG-------CCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 22421 | 0.66 | 0.619821 |
Target: 5'- -cGGCCGg--CCGcUUCGGCugGGGCCu- -3' miRNA: 3'- guCCGGCauaGGC-AGGCCG--CCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 21950 | 0.68 | 0.478309 |
Target: 5'- aCGGGCCcuucacggCCGggcagccCCGGCGGGUCGa -3' miRNA: 3'- -GUCCGGcaua----GGCa------GGCCGCCCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 21763 | 0.72 | 0.279186 |
Target: 5'- gCGGGCCGUcgggcgggGUCCGUCgaGcGCGGcGCCGg -3' miRNA: 3'- -GUCCGGCA--------UAGGCAGg-C-CGCC-CGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 20687 | 0.68 | 0.505571 |
Target: 5'- gGGGUCGUGcauaauggaauUCCGUUCggGGUGGGCCc- -3' miRNA: 3'- gUCCGGCAU-----------AGGCAGG--CCGCCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 20626 | 0.66 | 0.619821 |
Target: 5'- gGGGCCGgggGUUCGaCCaaCGGGCCGc -3' miRNA: 3'- gUCCGGCa--UAGGCaGGccGCCCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 20362 | 0.73 | 0.261569 |
Target: 5'- uGGGCCGcccgccgucccguugGUCCcggcGUCCGGCGGGCgGg -3' miRNA: 3'- gUCCGGCa--------------UAGG----CAGGCCGCCCGgCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 17459 | 0.66 | 0.582064 |
Target: 5'- -cGGUCGUcGUUCGUCCGGCcaaccuucgacgguuGGCCGa -3' miRNA: 3'- guCCGGCA-UAGGCAGGCCGc--------------CCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 15703 | 0.67 | 0.561915 |
Target: 5'- cCAGGCCG-GUCgGguguaCGGCGGGCg-- -3' miRNA: 3'- -GUCCGGCaUAGgCag---GCCGCCCGgca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 10592 | 0.67 | 0.542904 |
Target: 5'- aCAGGCCGcUGUCCGUCUcuCGGaccCCGUg -3' miRNA: 3'- -GUCCGGC-AUAGGCAGGccGCCc--GGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 5514 | 0.68 | 0.487319 |
Target: 5'- gAGGCCGccggccccCCGcccccCCGGCGGGCCc- -3' miRNA: 3'- gUCCGGCaua-----GGCa----GGCCGCCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 4816 | 0.68 | 0.496407 |
Target: 5'- aAGGCgGggGUCCGgggCGGCGaGGCCGc -3' miRNA: 3'- gUCCGgCa-UAGGCag-GCCGC-CCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 4743 | 0.72 | 0.285476 |
Target: 5'- cCGGGCCGgggcCCGgucgCCGGCGGcGUCGg -3' miRNA: 3'- -GUCCGGCaua-GGCa---GGCCGCC-CGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 4639 | 0.7 | 0.385274 |
Target: 5'- -cGGCCGUGacgacgucUCCGcggcggcugggCCGGCGGGCgCGg -3' miRNA: 3'- guCCGGCAU--------AGGCa----------GGCCGCCCG-GCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 4442 | 0.68 | 0.478309 |
Target: 5'- gGGGCgGcGUCCGcCCGG-GGGCUGc -3' miRNA: 3'- gUCCGgCaUAGGCaGGCCgCCCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 4324 | 0.68 | 0.487319 |
Target: 5'- -cGGCCGgccaCCG-CCGcGCGGGCCc- -3' miRNA: 3'- guCCGGCaua-GGCaGGC-CGCCCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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