miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 146075 0.66 0.610113
Target:  5'- gAGGCCagGUCaGUCCgGGCGGGCa-- -3'
miRNA:   3'- gUCCGGcaUAGgCAGG-CCGCCCGgca -5'
5949 5' -63.1 NC_001806.1 + 49501 0.66 0.610113
Target:  5'- gCGGGUCGgcgGUUCG-CgGGUGGcGCCGUc -3'
miRNA:   3'- -GUCCGGCa--UAGGCaGgCCGCC-CGGCA- -5'
5949 5' -63.1 NC_001806.1 + 69646 0.66 0.610113
Target:  5'- -uGGCgCGUAUCauggGUCCGGCcGuGCCGa -3'
miRNA:   3'- guCCG-GCAUAGg---CAGGCCGcC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 20626 0.66 0.619821
Target:  5'- gGGGCCGgggGUUCGaCCaaCGGGCCGc -3'
miRNA:   3'- gUCCGGCa--UAGGCaGGccGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 22421 0.66 0.619821
Target:  5'- -cGGCCGg--CCGcUUCGGCugGGGCCu- -3'
miRNA:   3'- guCCGGCauaGGC-AGGCCG--CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 101837 0.67 0.567654
Target:  5'- aGGGCgGUGaggcgcaccagcgCCGcCUGGCGGGCCc- -3'
miRNA:   3'- gUCCGgCAUa------------GGCaGGCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 54651 0.67 0.567654
Target:  5'- uGGGCCGUAacggccgacuuagCCG-CCGGUgagGGGUCGUc -3'
miRNA:   3'- gUCCGGCAUa------------GGCaGGCCG---CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 46092 0.68 0.505571
Target:  5'- gGGGCgGU-UuuGUCCGGCccgGGGCCu- -3'
miRNA:   3'- gUCCGgCAuAggCAGGCCG---CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 24848 0.67 0.514807
Target:  5'- aCGGGCCGcagcggcaCCGUgCUGGCggcggcggGGGCCGUg -3'
miRNA:   3'- -GUCCGGCaua-----GGCA-GGCCG--------CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 43278 0.67 0.514807
Target:  5'- -cGGCCGU-UCCGcCCucggaGGCGGaGCCGc -3'
miRNA:   3'- guCCGGCAuAGGCaGG-----CCGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 1463 0.67 0.518521
Target:  5'- cCGGGCCGUcgUCGUCgccgcgcagcaccagCGGgGGGgCGUc -3'
miRNA:   3'- -GUCCGGCAuaGGCAG---------------GCCgCCCgGCA- -5'
5949 5' -63.1 NC_001806.1 + 31103 0.67 0.524111
Target:  5'- gCGGGCCGcgGUCC--CCGGCuGGaGCCGc -3'
miRNA:   3'- -GUCCGGCa-UAGGcaGGCCG-CC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 99910 0.67 0.524111
Target:  5'- uCAGcGCCGUgauggucucGUUgGUCCcgggagaauGGCGGGCCGc -3'
miRNA:   3'- -GUC-CGGCA---------UAGgCAGG---------CCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 78810 0.67 0.524111
Target:  5'- --uGCCGUGU-CGUCCGacaucgagacGUGGGCCGUc -3'
miRNA:   3'- gucCGGCAUAgGCAGGC----------CGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 33787 0.67 0.52785
Target:  5'- --cGCCGUGUUCGgucucgguagccggCCGGCGGGUgGa -3'
miRNA:   3'- gucCGGCAUAGGCa-------------GGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 140885 0.67 0.533478
Target:  5'- aGGGCCc-GUCgGUacagGGCGGGCCGUc -3'
miRNA:   3'- gUCCGGcaUAGgCAgg--CCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 10592 0.67 0.542904
Target:  5'- aCAGGCCGcUGUCCGUCUcuCGGaccCCGUg -3'
miRNA:   3'- -GUCCGGC-AUAGGCAGGccGCCc--GGCA- -5'
5949 5' -63.1 NC_001806.1 + 64819 0.67 0.542904
Target:  5'- gUAGGCCGUGcCCGUucccagacguggCCGG-GGGuCCGa -3'
miRNA:   3'- -GUCCGGCAUaGGCA------------GGCCgCCC-GGCa -5'
5949 5' -63.1 NC_001806.1 + 76638 0.67 0.552385
Target:  5'- aAGGUgGUcgCCGUcCCGGCGaccguGGCCa- -3'
miRNA:   3'- gUCCGgCAuaGGCA-GGCCGC-----CCGGca -5'
5949 5' -63.1 NC_001806.1 + 15703 0.67 0.561915
Target:  5'- cCAGGCCG-GUCgGguguaCGGCGGGCg-- -3'
miRNA:   3'- -GUCCGGCaUAGgCag---GCCGCCCGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.