miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5949 5' -63.1 NC_001806.1 + 140885 0.67 0.533478
Target:  5'- aGGGCCc-GUCgGUacagGGCGGGCCGUc -3'
miRNA:   3'- gUCCGGcaUAGgCAgg--CCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 33787 0.67 0.52785
Target:  5'- --cGCCGUGUUCGgucucgguagccggCCGGCGGGUgGa -3'
miRNA:   3'- gucCGGCAUAGGCa-------------GGCCGCCCGgCa -5'
5949 5' -63.1 NC_001806.1 + 78810 0.67 0.524111
Target:  5'- --uGCCGUGU-CGUCCGacaucgagacGUGGGCCGUc -3'
miRNA:   3'- gucCGGCAUAgGCAGGC----------CGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 99910 0.67 0.524111
Target:  5'- uCAGcGCCGUgauggucucGUUgGUCCcgggagaauGGCGGGCCGc -3'
miRNA:   3'- -GUC-CGGCA---------UAGgCAGG---------CCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 31103 0.67 0.524111
Target:  5'- gCGGGCCGcgGUCC--CCGGCuGGaGCCGc -3'
miRNA:   3'- -GUCCGGCa-UAGGcaGGCCG-CC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 1463 0.67 0.518521
Target:  5'- cCGGGCCGUcgUCGUCgccgcgcagcaccagCGGgGGGgCGUc -3'
miRNA:   3'- -GUCCGGCAuaGGCAG---------------GCCgCCCgGCA- -5'
5949 5' -63.1 NC_001806.1 + 24848 0.67 0.514807
Target:  5'- aCGGGCCGcagcggcaCCGUgCUGGCggcggcggGGGCCGUg -3'
miRNA:   3'- -GUCCGGCaua-----GGCA-GGCCG--------CCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 43278 0.67 0.514807
Target:  5'- -cGGCCGU-UCCGcCCucggaGGCGGaGCCGc -3'
miRNA:   3'- guCCGGCAuAGGCaGG-----CCGCC-CGGCa -5'
5949 5' -63.1 NC_001806.1 + 46092 0.68 0.505571
Target:  5'- gGGGCgGU-UuuGUCCGGCccgGGGCCu- -3'
miRNA:   3'- gUCCGgCAuAggCAGGCCG---CCCGGca -5'
5949 5' -63.1 NC_001806.1 + 20687 0.68 0.505571
Target:  5'- gGGGUCGUGcauaauggaauUCCGUUCggGGUGGGCCc- -3'
miRNA:   3'- gUCCGGCAU-----------AGGCAGG--CCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 4816 0.68 0.496407
Target:  5'- aAGGCgGggGUCCGgggCGGCGaGGCCGc -3'
miRNA:   3'- gUCCGgCa-UAGGCag-GCCGC-CCGGCa -5'
5949 5' -63.1 NC_001806.1 + 5514 0.68 0.487319
Target:  5'- gAGGCCGccggccccCCGcccccCCGGCGGGCCc- -3'
miRNA:   3'- gUCCGGCaua-----GGCa----GGCCGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 4324 0.68 0.487319
Target:  5'- -cGGCCGgccaCCG-CCGcGCGGGCCc- -3'
miRNA:   3'- guCCGGCaua-GGCaGGC-CGCCCGGca -5'
5949 5' -63.1 NC_001806.1 + 21950 0.68 0.478309
Target:  5'- aCGGGCCcuucacggCCGggcagccCCGGCGGGUCGa -3'
miRNA:   3'- -GUCCGGcaua----GGCa------GGCCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 4442 0.68 0.478309
Target:  5'- gGGGCgGcGUCCGcCCGG-GGGCUGc -3'
miRNA:   3'- gUCCGgCaUAGGCaGGCCgCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 89496 0.68 0.469383
Target:  5'- aGGGCCuUGUuuGUCUGGCGGauCCGg -3'
miRNA:   3'- gUCCGGcAUAggCAGGCCGCCc-GGCa -5'
5949 5' -63.1 NC_001806.1 + 87893 0.68 0.469383
Target:  5'- -cGGCCGUAcCCGUCCaGgGGGaCCu- -3'
miRNA:   3'- guCCGGCAUaGGCAGGcCgCCC-GGca -5'
5949 5' -63.1 NC_001806.1 + 105087 0.68 0.469383
Target:  5'- aCGGuGCgGUAUCUGcagggCGGCGGGUCGUg -3'
miRNA:   3'- -GUC-CGgCAUAGGCag---GCCGCCCGGCA- -5'
5949 5' -63.1 NC_001806.1 + 3325 0.68 0.457908
Target:  5'- gGGGCCcgcggGUCCcUCCggccgcggggggcuGGCGGGCCGg -3'
miRNA:   3'- gUCCGGca---UAGGcAGG--------------CCGCCCGGCa -5'
5949 5' -63.1 NC_001806.1 + 77131 0.69 0.451791
Target:  5'- gCGGGCCGgggCCGUggaggagcUCGGgGGGCgCGUg -3'
miRNA:   3'- -GUCCGGCauaGGCA--------GGCCgCCCG-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.