miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5950 3' -64.4 NC_001806.1 + 10378 0.66 0.483803
Target:  5'- gGCCaagaCCUCGgggggGCGGGGGgaGGCGgGAg -3'
miRNA:   3'- -UGGg---GGGGU-----UGCCCCCgaCCGCgUUg -5'
5950 3' -64.4 NC_001806.1 + 68943 0.67 0.478381
Target:  5'- -aCCCCCgAGCGGGGggcuguggucccgccGCcccuguUGGCGCAGu -3'
miRNA:   3'- ugGGGGGgUUGCCCC---------------CG------ACCGCGUUg -5'
5950 3' -64.4 NC_001806.1 + 119953 0.67 0.474783
Target:  5'- cGCCCCCaCCAGCuGucucccgcuGGGCaGGCGgAGCu -3'
miRNA:   3'- -UGGGGG-GGUUGcC---------CCCGaCCGCgUUG- -5'
5950 3' -64.4 NC_001806.1 + 93902 0.67 0.474783
Target:  5'- gGCCgCCCCGAagaGGGGGaccccggGGCuCAGCc -3'
miRNA:   3'- -UGGgGGGGUUg--CCCCCga-----CCGcGUUG- -5'
5950 3' -64.4 NC_001806.1 + 27917 0.67 0.472094
Target:  5'- uGCCgCCCCUuuggggaggggaaaGGCGGGGGUauaaguuagcccUGGCcCGACa -3'
miRNA:   3'- -UGG-GGGGG--------------UUGCCCCCG------------ACCGcGUUG- -5'
5950 3' -64.4 NC_001806.1 + 3691 0.67 0.46852
Target:  5'- gGCCCCCgucagcgCCGcguucucgcgcgccaACaGGGGCgcguaGGCGCGGCg -3'
miRNA:   3'- -UGGGGG-------GGU---------------UGcCCCCGa----CCGCGUUG- -5'
5950 3' -64.4 NC_001806.1 + 91182 0.67 0.465848
Target:  5'- gGCCCgCgCCAACGccgucGGGGCguaccUGGCGCGc- -3'
miRNA:   3'- -UGGGgG-GGUUGC-----CCCCG-----ACCGCGUug -5'
5950 3' -64.4 NC_001806.1 + 51381 0.67 0.465848
Target:  5'- cCCCaCCCCGGa-GGGGCUccuuaGCGCGGCc -3'
miRNA:   3'- uGGG-GGGGUUgcCCCCGAc----CGCGUUG- -5'
5950 3' -64.4 NC_001806.1 + 151538 0.67 0.463185
Target:  5'- cGCCCgugggCCCGggcggccgggggcgGCGGGGGCcgcgaUGGCgGCGGCg -3'
miRNA:   3'- -UGGGg----GGGU--------------UGCCCCCG-----ACCG-CGUUG- -5'
5950 3' -64.4 NC_001806.1 + 14113 0.67 0.463185
Target:  5'- uGCCCCCCCAucccccugccggacAUGGuuuGGGg-GGCGCAc- -3'
miRNA:   3'- -UGGGGGGGU--------------UGCC---CCCgaCCGCGUug -5'
5950 3' -64.4 NC_001806.1 + 148757 0.67 0.457002
Target:  5'- cGCuCCCCCCGuccucucgaGgGGGGGCgccccCGCAACu -3'
miRNA:   3'- -UG-GGGGGGU---------UgCCCCCGacc--GCGUUG- -5'
5950 3' -64.4 NC_001806.1 + 120806 0.67 0.454365
Target:  5'- gGCCCCCgCCucUGGGGuuugcccuccccccGCccccggcaUGGCGCAGCu -3'
miRNA:   3'- -UGGGGG-GGuuGCCCC--------------CG--------ACCGCGUUG- -5'
5950 3' -64.4 NC_001806.1 + 74594 0.67 0.454365
Target:  5'- uACCCCgaCGACGGcGGGCUGucgccagaggccacGCGCAu- -3'
miRNA:   3'- -UGGGGggGUUGCC-CCCGAC--------------CGCGUug -5'
5950 3' -64.4 NC_001806.1 + 26688 0.67 0.448246
Target:  5'- gGCCCCcaccgCCCGGCGuGGGCccggggGGCGgGGCu -3'
miRNA:   3'- -UGGGG-----GGGUUGCcCCCGa-----CCGCgUUG- -5'
5950 3' -64.4 NC_001806.1 + 148172 0.67 0.448246
Target:  5'- cGCCUCUgCGugGgGGGGCgcggGGCGUccGGCg -3'
miRNA:   3'- -UGGGGGgGUugC-CCCCGa---CCGCG--UUG- -5'
5950 3' -64.4 NC_001806.1 + 150720 0.67 0.448246
Target:  5'- gGCCCgCCCUguGAgGGcGGGCUGGCuccaAGCg -3'
miRNA:   3'- -UGGG-GGGG--UUgCC-CCCGACCGcg--UUG- -5'
5950 3' -64.4 NC_001806.1 + 23735 0.67 0.448246
Target:  5'- cGCCCCCgCCGcccaggccgcguGCGGcGGC-GGCGaCGACg -3'
miRNA:   3'- -UGGGGG-GGU------------UGCCcCCGaCCGC-GUUG- -5'
5950 3' -64.4 NC_001806.1 + 75577 0.67 0.447375
Target:  5'- cACUCCCCCAGCGGgcgcgcccugcaGGaGCUgggaaaggucaucGGCGCcACg -3'
miRNA:   3'- -UGGGGGGGUUGCC------------CC-CGA-------------CCGCGuUG- -5'
5950 3' -64.4 NC_001806.1 + 85977 0.67 0.439584
Target:  5'- cGCgCCUCCCGGgGGGucGGCaGGCGaCGGCg -3'
miRNA:   3'- -UG-GGGGGGUUgCCC--CCGaCCGC-GUUG- -5'
5950 3' -64.4 NC_001806.1 + 58718 0.67 0.439584
Target:  5'- aACUCCaCCCGAcguaggucCGGGuacuGGUUGGCGCGAa -3'
miRNA:   3'- -UGGGG-GGGUU--------GCCC----CCGACCGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.