miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5951 3' -62 NC_001806.1 + 52639 0.65 0.687089
Target:  5'- gGGCgCGGCGcgacaacgaGCCCCCGCCCc- -3'
miRNA:   3'- gUCG-GUCGCauagg----UGGGGGCGGGcc -5'
5951 3' -62 NC_001806.1 + 106335 0.66 0.685155
Target:  5'- gGGCC-GCGUGauacaCCGcCCCCCcgaccgccgguugggGCCCGGc -3'
miRNA:   3'- gUCGGuCGCAUa----GGU-GGGGG---------------CGGGCC- -5'
5951 3' -62 NC_001806.1 + 56805 0.66 0.681284
Target:  5'- gCAGUCccuGGCGguggUCGCCCCCggGCCCGc -3'
miRNA:   3'- -GUCGG---UCGCaua-GGUGGGGG--CGGGCc -5'
5951 3' -62 NC_001806.1 + 118764 0.66 0.681284
Target:  5'- uGGCCGcccugaugcGCGg--CCGCCCCgGaCUCGGg -3'
miRNA:   3'- gUCGGU---------CGCauaGGUGGGGgC-GGGCC- -5'
5951 3' -62 NC_001806.1 + 129645 0.66 0.681284
Target:  5'- gAGCUccugcaGGC-UGcCCugCgCCCGCCCGGg -3'
miRNA:   3'- gUCGG------UCGcAUaGGugG-GGGCGGGCC- -5'
5951 3' -62 NC_001806.1 + 63387 0.66 0.681284
Target:  5'- gAGCCGGCGauggCCGCCCCC---UGGg -3'
miRNA:   3'- gUCGGUCGCaua-GGUGGGGGcggGCC- -5'
5951 3' -62 NC_001806.1 + 66642 0.66 0.681284
Target:  5'- gGGCCGGC---UCCAa-CCCGCgCGGg -3'
miRNA:   3'- gUCGGUCGcauAGGUggGGGCGgGCC- -5'
5951 3' -62 NC_001806.1 + 67756 0.66 0.681284
Target:  5'- aCAGCCAaacGCGgcUaCCGCCUCCGgUgGGu -3'
miRNA:   3'- -GUCGGU---CGCauA-GGUGGGGGCgGgCC- -5'
5951 3' -62 NC_001806.1 + 108288 0.66 0.681284
Target:  5'- aAGUgGGCGUGgcuucggCCGuuUCUCCGCCCGa -3'
miRNA:   3'- gUCGgUCGCAUa------GGU--GGGGGCGGGCc -5'
5951 3' -62 NC_001806.1 + 146031 0.66 0.681284
Target:  5'- -uGCCcuauAGUGUAguuaaCCcCCCCCGCCCu- -3'
miRNA:   3'- guCGG----UCGCAUa----GGuGGGGGCGGGcc -5'
5951 3' -62 NC_001806.1 + 30283 0.66 0.681284
Target:  5'- cCGGCCcccggGGCGgagCCgGCCgCCCGCCCcgcGGa -3'
miRNA:   3'- -GUCGG-----UCGCauaGG-UGG-GGGCGGG---CC- -5'
5951 3' -62 NC_001806.1 + 83226 0.66 0.681284
Target:  5'- -cGCCGaCGUGgucaCCGCCCCCucaaggGCCCGcGg -3'
miRNA:   3'- guCGGUcGCAUa---GGUGGGGG------CGGGC-C- -5'
5951 3' -62 NC_001806.1 + 144622 0.66 0.680314
Target:  5'- gCGGCCaaggGGCGUcggcgacAUCCuCCCCCuaaGCgCCGGc -3'
miRNA:   3'- -GUCGG----UCGCA-------UAGGuGGGGG---CG-GGCC- -5'
5951 3' -62 NC_001806.1 + 6228 0.66 0.671579
Target:  5'- gCGGaCGGCGUcggcAUCgcgaCGCCCCgGCUCGGg -3'
miRNA:   3'- -GUCgGUCGCA----UAG----GUGGGGgCGGGCC- -5'
5951 3' -62 NC_001806.1 + 27538 0.66 0.671579
Target:  5'- -cGCCGcGCGUAaCCACUCCC-CUgGGg -3'
miRNA:   3'- guCGGU-CGCAUaGGUGGGGGcGGgCC- -5'
5951 3' -62 NC_001806.1 + 57868 0.66 0.669635
Target:  5'- gGGCCGuguccgcGCGccAUCCucgccccccgagcGCCCCCGCuuGGu -3'
miRNA:   3'- gUCGGU-------CGCa-UAGG-------------UGGGGGCGggCC- -5'
5951 3' -62 NC_001806.1 + 26904 0.66 0.661846
Target:  5'- -cGCgGGUGcgcuUCuCGCCCCaCGUCCGGg -3'
miRNA:   3'- guCGgUCGCau--AG-GUGGGG-GCGGGCC- -5'
5951 3' -62 NC_001806.1 + 143930 0.66 0.661846
Target:  5'- gAGcCCGGuCG-AUCgacgagCACCCCCGCCCa- -3'
miRNA:   3'- gUC-GGUC-GCaUAG------GUGGGGGCGGGcc -5'
5951 3' -62 NC_001806.1 + 136368 0.66 0.661846
Target:  5'- gGGCCGGCGcgcUCCgcgGCCUCCGCgaCCGu -3'
miRNA:   3'- gUCGGUCGCau-AGG---UGGGGGCG--GGCc -5'
5951 3' -62 NC_001806.1 + 131993 0.66 0.661846
Target:  5'- gGGCCGGUGgcccUGUUCGCCCCgCugcguaucgGCUCGGa -3'
miRNA:   3'- gUCGGUCGC----AUAGGUGGGG-G---------CGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.