miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5951 5' -51.8 NC_001806.1 + 36494 0.66 0.985527
Target:  5'- cAGCGGA--GGGGUGUGgugGGUGUcCUu -3'
miRNA:   3'- -UCGCCUugCCCCAUACa--CUAUAcGAu -5'
5951 5' -51.8 NC_001806.1 + 50330 0.66 0.983663
Target:  5'- cGCGGGAggccgccuuccUGGGGcgcGUGcugGAUGUGCUGg -3'
miRNA:   3'- uCGCCUU-----------GCCCCa--UACa--CUAUACGAU- -5'
5951 5' -51.8 NC_001806.1 + 25662 0.66 0.981622
Target:  5'- gAG-GGGGCGGuGGUGUGUagcaggagcGGUGUGUUGc -3'
miRNA:   3'- -UCgCCUUGCC-CCAUACA---------CUAUACGAU- -5'
5951 5' -51.8 NC_001806.1 + 145559 0.66 0.979397
Target:  5'- uGCGGGggagGgGGGGUGUGgaagGAaAUGCa- -3'
miRNA:   3'- uCGCCU----UgCCCCAUACa---CUaUACGau -5'
5951 5' -51.8 NC_001806.1 + 142164 0.66 0.974355
Target:  5'- cGCGGggUGGGGUccgacGUGgcgaUGAUggGCg- -3'
miRNA:   3'- uCGCCuuGCCCCA-----UAC----ACUAuaCGau -5'
5951 5' -51.8 NC_001806.1 + 84432 0.66 0.974355
Target:  5'- cAGCccgGGGACGGGGgccgguuUGUGAgccUGCUu -3'
miRNA:   3'- -UCG---CCUUGCCCCau-----ACACUau-ACGAu -5'
5951 5' -51.8 NC_001806.1 + 32624 0.67 0.966532
Target:  5'- gGGUGGGAgGGGGggaaaagaacggGcUGGUGUGCUGu -3'
miRNA:   3'- -UCGCCUUgCCCCaua---------C-ACUAUACGAU- -5'
5951 5' -51.8 NC_001806.1 + 133140 0.67 0.965194
Target:  5'- cGCGGucuGCGGGGgcgAUG-GggGUGCg- -3'
miRNA:   3'- uCGCCu--UGCCCCa--UACaCuaUACGau -5'
5951 5' -51.8 NC_001806.1 + 143249 0.67 0.961685
Target:  5'- uGCGGGuUGGGGggggAUGUGGgcggggGUGCg- -3'
miRNA:   3'- uCGCCUuGCCCCa---UACACUa-----UACGau -5'
5951 5' -51.8 NC_001806.1 + 25405 0.67 0.961685
Target:  5'- gGGCGGGAgGGGGcgaggggcgGUGGUgGUGCg- -3'
miRNA:   3'- -UCGCCUUgCCCCaua------CACUA-UACGau -5'
5951 5' -51.8 NC_001806.1 + 55980 0.68 0.945221
Target:  5'- -cCGGAugGGGGUGUGcGuucgAUGCg- -3'
miRNA:   3'- ucGCCUugCCCCAUACaCua--UACGau -5'
5951 5' -51.8 NC_001806.1 + 12102 0.68 0.940475
Target:  5'- gGGUGGGauauGCGGGGc-UGUGA-GUGCUGu -3'
miRNA:   3'- -UCGCCU----UGCCCCauACACUaUACGAU- -5'
5951 5' -51.8 NC_001806.1 + 33997 0.69 0.930211
Target:  5'- gGGCaGGGGCGGGGgc-GUGGgcggggGUGCUc -3'
miRNA:   3'- -UCG-CCUUGCCCCauaCACUa-----UACGAu -5'
5951 5' -51.8 NC_001806.1 + 24870 0.72 0.793835
Target:  5'- uGGCGGcGGCGGGGgccGUGGagGUGCUGg -3'
miRNA:   3'- -UCGCC-UUGCCCCauaCACUa-UACGAU- -5'
5951 5' -51.8 NC_001806.1 + 93731 0.76 0.586785
Target:  5'- gGGCGGGGCGGGGaAUGUGuGUAaaauaaauuauUGCUAc -3'
miRNA:   3'- -UCGCCUUGCCCCaUACAC-UAU-----------ACGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.