Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5951 | 5' | -51.8 | NC_001806.1 | + | 12102 | 0.68 | 0.940475 |
Target: 5'- gGGUGGGauauGCGGGGc-UGUGA-GUGCUGu -3' miRNA: 3'- -UCGCCU----UGCCCCauACACUaUACGAU- -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 24870 | 0.72 | 0.793835 |
Target: 5'- uGGCGGcGGCGGGGgccGUGGagGUGCUGg -3' miRNA: 3'- -UCGCC-UUGCCCCauaCACUa-UACGAU- -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 25405 | 0.67 | 0.961685 |
Target: 5'- gGGCGGGAgGGGGcgaggggcgGUGGUgGUGCg- -3' miRNA: 3'- -UCGCCUUgCCCCaua------CACUA-UACGau -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 25662 | 0.66 | 0.981622 |
Target: 5'- gAG-GGGGCGGuGGUGUGUagcaggagcGGUGUGUUGc -3' miRNA: 3'- -UCgCCUUGCC-CCAUACA---------CUAUACGAU- -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 32624 | 0.67 | 0.966532 |
Target: 5'- gGGUGGGAgGGGGggaaaagaacggGcUGGUGUGCUGu -3' miRNA: 3'- -UCGCCUUgCCCCaua---------C-ACUAUACGAU- -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 33997 | 0.69 | 0.930211 |
Target: 5'- gGGCaGGGGCGGGGgc-GUGGgcggggGUGCUc -3' miRNA: 3'- -UCG-CCUUGCCCCauaCACUa-----UACGAu -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 36494 | 0.66 | 0.985527 |
Target: 5'- cAGCGGA--GGGGUGUGgugGGUGUcCUu -3' miRNA: 3'- -UCGCCUugCCCCAUACa--CUAUAcGAu -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 50330 | 0.66 | 0.983663 |
Target: 5'- cGCGGGAggccgccuuccUGGGGcgcGUGcugGAUGUGCUGg -3' miRNA: 3'- uCGCCUU-----------GCCCCa--UACa--CUAUACGAU- -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 55980 | 0.68 | 0.945221 |
Target: 5'- -cCGGAugGGGGUGUGcGuucgAUGCg- -3' miRNA: 3'- ucGCCUugCCCCAUACaCua--UACGau -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 84432 | 0.66 | 0.974355 |
Target: 5'- cAGCccgGGGACGGGGgccgguuUGUGAgccUGCUu -3' miRNA: 3'- -UCG---CCUUGCCCCau-----ACACUau-ACGAu -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 93731 | 0.76 | 0.586785 |
Target: 5'- gGGCGGGGCGGGGaAUGUGuGUAaaauaaauuauUGCUAc -3' miRNA: 3'- -UCGCCUUGCCCCaUACAC-UAU-----------ACGAU- -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 133140 | 0.67 | 0.965194 |
Target: 5'- cGCGGucuGCGGGGgcgAUG-GggGUGCg- -3' miRNA: 3'- uCGCCu--UGCCCCa--UACaCuaUACGau -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 142164 | 0.66 | 0.974355 |
Target: 5'- cGCGGggUGGGGUccgacGUGgcgaUGAUggGCg- -3' miRNA: 3'- uCGCCuuGCCCCA-----UAC----ACUAuaCGau -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 143249 | 0.67 | 0.961685 |
Target: 5'- uGCGGGuUGGGGggggAUGUGGgcggggGUGCg- -3' miRNA: 3'- uCGCCUuGCCCCa---UACACUa-----UACGau -5' |
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5951 | 5' | -51.8 | NC_001806.1 | + | 145559 | 0.66 | 0.979397 |
Target: 5'- uGCGGGggagGgGGGGUGUGgaagGAaAUGCa- -3' miRNA: 3'- uCGCCU----UgCCCCAUACa---CUaUACGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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