miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5952 3' -54.9 NC_001806.1 + 136535 0.66 0.94394
Target:  5'- -----cGGGCcgCUcggGCCGCCCGGCg- -3'
miRNA:   3'- cauauuCCUGuaGG---UGGUGGGCCGgc -5'
5952 3' -54.9 NC_001806.1 + 90495 0.66 0.939293
Target:  5'- -----cGGACua-CACCcCCCGGCCc -3'
miRNA:   3'- cauauuCCUGuagGUGGuGGGCCGGc -5'
5952 3' -54.9 NC_001806.1 + 20310 0.66 0.939293
Target:  5'- ----uGGGGCGgucCCGCC-CgCCGGCCa -3'
miRNA:   3'- cauauUCCUGUa--GGUGGuG-GGCCGGc -5'
5952 3' -54.9 NC_001806.1 + 57760 0.66 0.934406
Target:  5'- ----cGGGACGggCCGCCGuCCCGuccGCCGc -3'
miRNA:   3'- cauauUCCUGUa-GGUGGU-GGGC---CGGC- -5'
5952 3' -54.9 NC_001806.1 + 120892 0.66 0.934406
Target:  5'- ---cGGGGAC--CUugC-CCCGGCCGg -3'
miRNA:   3'- cauaUUCCUGuaGGugGuGGGCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 71427 0.66 0.934406
Target:  5'- ---gGAGGACAccgUCgCGCCACCCacggacuuGCCGu -3'
miRNA:   3'- cauaUUCCUGU---AG-GUGGUGGGc-------CGGC- -5'
5952 3' -54.9 NC_001806.1 + 60594 0.66 0.934406
Target:  5'- ----cGGGACGUUaccggggGCCACCCcGGCCc -3'
miRNA:   3'- cauauUCCUGUAGg------UGGUGGG-CCGGc -5'
5952 3' -54.9 NC_001806.1 + 21812 0.66 0.934406
Target:  5'- -----cGGACG-CCGCCcccGCCCgGGCCa -3'
miRNA:   3'- cauauuCCUGUaGGUGG---UGGG-CCGGc -5'
5952 3' -54.9 NC_001806.1 + 89896 0.66 0.929277
Target:  5'- ---cAGGGACc-CCGCgUugCCGGCCGc -3'
miRNA:   3'- cauaUUCCUGuaGGUG-GugGGCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 112326 0.66 0.929277
Target:  5'- ---cAAGG-CGggCCACCGCCgggaGGCCGu -3'
miRNA:   3'- cauaUUCCuGUa-GGUGGUGGg---CCGGC- -5'
5952 3' -54.9 NC_001806.1 + 36767 0.66 0.929277
Target:  5'- --cUAAGGGCA-CUAUgACaCCGGCCu -3'
miRNA:   3'- cauAUUCCUGUaGGUGgUG-GGCCGGc -5'
5952 3' -54.9 NC_001806.1 + 69421 0.66 0.923906
Target:  5'- -----cGGGCGUCC-CCGCgcggacgcccaCCGGCCa -3'
miRNA:   3'- cauauuCCUGUAGGuGGUG-----------GGCCGGc -5'
5952 3' -54.9 NC_001806.1 + 51804 0.66 0.923906
Target:  5'- ---cAAGuACG-CCGCCACCgUGGCCGg -3'
miRNA:   3'- cauaUUCcUGUaGGUGGUGG-GCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 48994 0.66 0.923906
Target:  5'- ---cGAGGGgGUCCggcggcACCuacCCCGGCCu -3'
miRNA:   3'- cauaUUCCUgUAGG------UGGu--GGGCCGGc -5'
5952 3' -54.9 NC_001806.1 + 29827 0.66 0.923906
Target:  5'- ----cGGGGCGUCuCAcgcagccccCCAgCCGGCCGc -3'
miRNA:   3'- cauauUCCUGUAG-GU---------GGUgGGCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 136691 0.67 0.918292
Target:  5'- --uUGGGGcuGCAgaccgcgggCCGCCACgUGGCCGa -3'
miRNA:   3'- cauAUUCC--UGUa--------GGUGGUGgGCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 32994 0.67 0.918292
Target:  5'- -----cGGGCcgggCCGCCACgggggCCGGCCGu -3'
miRNA:   3'- cauauuCCUGua--GGUGGUG-----GGCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 145705 0.67 0.918292
Target:  5'- ---gGGGGAUGgaguaCCGgcCCACCUGGCCGc -3'
miRNA:   3'- cauaUUCCUGUa----GGU--GGUGGGCCGGC- -5'
5952 3' -54.9 NC_001806.1 + 83214 0.67 0.915979
Target:  5'- ---cGAGGACGUCgccgccgacgugguCACCGCCCccucaagGGCCc -3'
miRNA:   3'- cauaUUCCUGUAG--------------GUGGUGGG-------CCGGc -5'
5952 3' -54.9 NC_001806.1 + 128214 0.67 0.912436
Target:  5'- gGUAUucAGGGAUA-CCGCgGCgUCGGCCGu -3'
miRNA:   3'- -CAUA--UUCCUGUaGGUGgUG-GGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.