miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5952 5' -55.2 NC_001806.1 + 108546 0.65 0.932508
Target:  5'- gUGCGGCUGgccgcgcccgCCGcuCCGCGGUCAa -3'
miRNA:   3'- -ACGUCGGCacaa------GGUu-GGUGCCAGUg -5'
5952 5' -55.2 NC_001806.1 + 90843 0.66 0.929391
Target:  5'- gGCGGUCGUGggaCCcGCCGCcGUgGCa -3'
miRNA:   3'- aCGUCGGCACaa-GGuUGGUGcCAgUG- -5'
5952 5' -55.2 NC_001806.1 + 95619 0.66 0.924002
Target:  5'- gUGCuGCCcgcgacGUUC--GCCGCGGUCGCc -3'
miRNA:   3'- -ACGuCGGca----CAAGguUGGUGCCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 111664 0.66 0.924002
Target:  5'- cGCGGCCaUGgugCCGACCG-GGUCc- -3'
miRNA:   3'- aCGUCGGcACaa-GGUUGGUgCCAGug -5'
5952 5' -55.2 NC_001806.1 + 134832 0.66 0.924002
Target:  5'- cGCGGCUGgcgGUcgCCGACCugGcG-CACc -3'
miRNA:   3'- aCGUCGGCa--CAa-GGUUGGugC-CaGUG- -5'
5952 5' -55.2 NC_001806.1 + 70606 0.66 0.924002
Target:  5'- cGCgAGCCuGcGUUCCGucaucaccgaaACCACGG-CGCa -3'
miRNA:   3'- aCG-UCGG-CaCAAGGU-----------UGGUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 113675 0.66 0.918367
Target:  5'- gUGCauGGCCGUGUaCCGggACCugGuGgcgCACg -3'
miRNA:   3'- -ACG--UCGGCACAaGGU--UGGugC-Ca--GUG- -5'
5952 5' -55.2 NC_001806.1 + 4307 0.66 0.918367
Target:  5'- aGCGGcCCGUGgcgucgcggCCGGCCACcGcCGCg -3'
miRNA:   3'- aCGUC-GGCACaa-------GGUUGGUGcCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 1953 0.66 0.918367
Target:  5'- cGCcGCCGg---CCAGCgCACGG-CGCa -3'
miRNA:   3'- aCGuCGGCacaaGGUUG-GUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 54786 0.66 0.918367
Target:  5'- gGCAGCaccaGggCCAGCC-CGGUgGCa -3'
miRNA:   3'- aCGUCGgca-CaaGGUUGGuGCCAgUG- -5'
5952 5' -55.2 NC_001806.1 + 130921 0.66 0.912489
Target:  5'- aUGCAGCUgGUGUUCgAA-CugGGcCACu -3'
miRNA:   3'- -ACGUCGG-CACAAGgUUgGugCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 37308 0.66 0.906368
Target:  5'- cGCAGgCgCGUGgcgagguuaUCCAgcacaGCCGCGGUCGu -3'
miRNA:   3'- aCGUC-G-GCACa--------AGGU-----UGGUGCCAGUg -5'
5952 5' -55.2 NC_001806.1 + 23069 0.66 0.906368
Target:  5'- gGCcGCCGUGgccgCCGugCGCgccgugagccuGGUCGCc -3'
miRNA:   3'- aCGuCGGCACaa--GGUugGUG-----------CCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 50505 0.67 0.893408
Target:  5'- cGCGGUCGUGggggCCGAgCACGaGgCGCu -3'
miRNA:   3'- aCGUCGGCACaa--GGUUgGUGC-CaGUG- -5'
5952 5' -55.2 NC_001806.1 + 75218 0.67 0.890703
Target:  5'- aUGCGGCCGUGcgggcgcaccgcgUCCuggucgaCGCGGUgACg -3'
miRNA:   3'- -ACGUCGGCACa------------AGGuug----GUGCCAgUG- -5'
5952 5' -55.2 NC_001806.1 + 79480 0.67 0.886576
Target:  5'- cGCGGCCcccUGggCCGGCaguCACGGcUCGCg -3'
miRNA:   3'- aCGUCGGc--ACaaGGUUG---GUGCC-AGUG- -5'
5952 5' -55.2 NC_001806.1 + 112356 0.67 0.872225
Target:  5'- gGCcuGGCuCGUGgaCCucACCACGGcCACg -3'
miRNA:   3'- aCG--UCG-GCACaaGGu-UGGUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 91148 0.67 0.871484
Target:  5'- cGUGGCCGcUGUUCgagggccaggacaCGGCCGCGGccCGCg -3'
miRNA:   3'- aCGUCGGC-ACAAG-------------GUUGGUGCCa-GUG- -5'
5952 5' -55.2 NC_001806.1 + 43276 0.67 0.869995
Target:  5'- cGCGGCCGU--UCCGcccucggaggcggaGCCGCGGcUGCa -3'
miRNA:   3'- aCGUCGGCAcaAGGU--------------UGGUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 24289 0.67 0.864717
Target:  5'- gUGC-GCCGUGcgCUGGCCGgCGG-CGCg -3'
miRNA:   3'- -ACGuCGGCACaaGGUUGGU-GCCaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.