miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5952 5' -55.2 NC_001806.1 + 93810 0.78 0.32362
Target:  5'- gGCGGCCGUGaUUCCucuCCGCGGUguCu -3'
miRNA:   3'- aCGUCGGCAC-AAGGuu-GGUGCCAguG- -5'
5952 5' -55.2 NC_001806.1 + 122912 0.75 0.440005
Target:  5'- aGCAGUCGUGgagcgUCCcgacgccaggGACCACGGUCu- -3'
miRNA:   3'- aCGUCGGCACa----AGG----------UUGGUGCCAGug -5'
5952 5' -55.2 NC_001806.1 + 115044 0.75 0.467894
Target:  5'- gGCAGCCGUGUaCCugcggaaCGCGGUCGu -3'
miRNA:   3'- aCGUCGGCACAaGGuug----GUGCCAGUg -5'
5952 5' -55.2 NC_001806.1 + 86670 0.74 0.50643
Target:  5'- gGCGGCCGUGa---GGCCGCGG-CACa -3'
miRNA:   3'- aCGUCGGCACaaggUUGGUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 144537 0.73 0.556379
Target:  5'- cGCGGCCGUG--CCGAUCGCGGguggUGCg -3'
miRNA:   3'- aCGUCGGCACaaGGUUGGUGCCa---GUG- -5'
5952 5' -55.2 NC_001806.1 + 108850 0.72 0.649042
Target:  5'- cUGCucGGCUGUgGUUCCGGCCgccaGCGcGUCGCg -3'
miRNA:   3'- -ACG--UCGGCA-CAAGGUUGG----UGC-CAGUG- -5'
5952 5' -55.2 NC_001806.1 + 136590 0.72 0.62834
Target:  5'- aGCAGCgucguccuaagCGUGUUCC-GCCACGuGUCGa -3'
miRNA:   3'- aCGUCG-----------GCACAAGGuUGGUGC-CAGUg -5'
5952 5' -55.2 NC_001806.1 + 95533 0.72 0.62834
Target:  5'- aGCGGUCGUuggCCAGCCugGGgCGCu -3'
miRNA:   3'- aCGUCGGCAcaaGGUUGGugCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 2219 0.71 0.69021
Target:  5'- gGCGGCCGUG-UCCGGCCcgcacagcCGGUUg- -3'
miRNA:   3'- aCGUCGGCACaAGGUUGGu-------GCCAGug -5'
5952 5' -55.2 NC_001806.1 + 94294 0.7 0.740483
Target:  5'- gGCAGCCuGgagacGUUCgCGACCGCGGgagacgUCGCg -3'
miRNA:   3'- aCGUCGG-Ca----CAAG-GUUGGUGCC------AGUG- -5'
5952 5' -55.2 NC_001806.1 + 21925 0.7 0.759982
Target:  5'- cGCGGCgGUGgccggCCGcgacGCCACGGgcccuUCACg -3'
miRNA:   3'- aCGUCGgCACaa---GGU----UGGUGCC-----AGUG- -5'
5952 5' -55.2 NC_001806.1 + 78954 0.69 0.769563
Target:  5'- cUGguGCuCGUGgacaucUCCAugACCcCGGUCGCg -3'
miRNA:   3'- -ACguCG-GCACa-----AGGU--UGGuGCCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 107961 0.69 0.796604
Target:  5'- gGgGGCCGUGUUuaugcgcuacaccCCGGCCGgggaGGUCAUg -3'
miRNA:   3'- aCgUCGGCACAA-------------GGUUGGUg---CCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 29839 0.69 0.797515
Target:  5'- cGCAGCCccccagCCGGCCGCGGcUCGg -3'
miRNA:   3'- aCGUCGGcacaa-GGUUGGUGCC-AGUg -5'
5952 5' -55.2 NC_001806.1 + 55481 0.69 0.805643
Target:  5'- cGCgAGCCGUaccGggCCAaugggucGCgGCGGUCGCa -3'
miRNA:   3'- aCG-UCGGCA---CaaGGU-------UGgUGCCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 4736 0.69 0.788338
Target:  5'- cGCGGCCccGggCCGggGCC-CGGUCGCc -3'
miRNA:   3'- aCGUCGGcaCaaGGU--UGGuGCCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 128570 0.69 0.803848
Target:  5'- cGCGGUCGUagcgggaggucacgGcgCCGACCACGG-CAUa -3'
miRNA:   3'- aCGUCGGCA--------------CaaGGUUGGUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 49380 0.69 0.788338
Target:  5'- aUGCGGcCCGUagccagUCgGugCGCGGUCGCc -3'
miRNA:   3'- -ACGUC-GGCAca----AGgUugGUGCCAGUG- -5'
5952 5' -55.2 NC_001806.1 + 2614 0.68 0.824092
Target:  5'- gGUGGuCCGUGagCuCGGCCACGG-CGCg -3'
miRNA:   3'- aCGUC-GGCACaaG-GUUGGUGCCaGUG- -5'
5952 5' -55.2 NC_001806.1 + 74560 0.68 0.832605
Target:  5'- cGCGGCCuuUGUUCCugcGCCcgGCGcGUCGCc -3'
miRNA:   3'- aCGUCGGc-ACAAGGu--UGG--UGC-CAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.