miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5953 5' -58.5 NC_001806.1 + 72406 0.66 0.822676
Target:  5'- aCGGCCGCggcucugcaucuuuaCGGGGCCA-GCGaGACUu -3'
miRNA:   3'- aGCUGGCG---------------GUUCCGGUaCGCgCUGAc -5'
5953 5' -58.5 NC_001806.1 + 4072 0.66 0.822676
Target:  5'- aCGGCCGCCGGGGCgcccgaggccucgaaCcgGCGUcGCg- -3'
miRNA:   3'- aGCUGGCGGUUCCG---------------GuaCGCGcUGac -5'
5953 5' -58.5 NC_001806.1 + 67505 0.66 0.819299
Target:  5'- cCGACCcccuggggaGCCcuGGGCCGU-CGCGGCg- -3'
miRNA:   3'- aGCUGG---------CGGu-UCCGGUAcGCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 33346 0.66 0.810741
Target:  5'- cUUGGCCGCCccggcugcaggGGGGCCcgGagagcCGCGGCa- -3'
miRNA:   3'- -AGCUGGCGG-----------UUCCGGuaC-----GCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 2495 0.66 0.810741
Target:  5'- gUCGccGCCGCCGcacgcGGCC-UGgGCGGCg- -3'
miRNA:   3'- -AGC--UGGCGGUu----CCGGuACgCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 30629 0.66 0.810741
Target:  5'- cCGACU--CAGGGCCGgggggGCGCGGCc- -3'
miRNA:   3'- aGCUGGcgGUUCCGGUa----CGCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 1616 0.66 0.802026
Target:  5'- gCGGCgCGCCcAGGCCccaGCGCGcGCa- -3'
miRNA:   3'- aGCUG-GCGGuUCCGGua-CGCGC-UGac -5'
5953 5' -58.5 NC_001806.1 + 62196 0.66 0.802026
Target:  5'- -gGAUCGCCAGGuccGCCGUcGCGCu-CUGg -3'
miRNA:   3'- agCUGGCGGUUC---CGGUA-CGCGcuGAC- -5'
5953 5' -58.5 NC_001806.1 + 24288 0.66 0.802026
Target:  5'- -aGugCGCCGugcgcuGGCCGgcgGCGCGGgacCUGc -3'
miRNA:   3'- agCugGCGGUu-----CCGGUa--CGCGCU---GAC- -5'
5953 5' -58.5 NC_001806.1 + 128518 0.66 0.802026
Target:  5'- gCGugCGgCAuGGCCAUGCG-GGCc- -3'
miRNA:   3'- aGCugGCgGUuCCGGUACGCgCUGac -5'
5953 5' -58.5 NC_001806.1 + 27278 0.66 0.802026
Target:  5'- aUCGGCgGCC---GCCA-GCGCGGCg- -3'
miRNA:   3'- -AGCUGgCGGuucCGGUaCGCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 17237 0.66 0.793162
Target:  5'- gUCGGCCuGUCuccccGCCGUGCGUGGCc- -3'
miRNA:   3'- -AGCUGG-CGGuuc--CGGUACGCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 15737 0.66 0.793162
Target:  5'- cCGGCCGCgCGGGaGCgGUaGCGCGAg-- -3'
miRNA:   3'- aGCUGGCG-GUUC-CGgUA-CGCGCUgac -5'
5953 5' -58.5 NC_001806.1 + 95038 0.66 0.793162
Target:  5'- -aGACCGCCGcgguGGCCGUGgaacugGCG-CUGu -3'
miRNA:   3'- agCUGGCGGUu---CCGGUACg-----CGCuGAC- -5'
5953 5' -58.5 NC_001806.1 + 1547 0.66 0.793162
Target:  5'- gCGGCCcgcGCCAccGGGCCGggccgGCGCGcACc- -3'
miRNA:   3'- aGCUGG---CGGU--UCCGGUa----CGCGC-UGac -5'
5953 5' -58.5 NC_001806.1 + 74035 0.66 0.784157
Target:  5'- -gGGCC-CCGAGGCCGUucagGUuCGGCUGg -3'
miRNA:   3'- agCUGGcGGUUCCGGUA----CGcGCUGAC- -5'
5953 5' -58.5 NC_001806.1 + 22775 0.66 0.784157
Target:  5'- cCGGgCGCCGcgcccAGGCCGgccGCGUGGCc- -3'
miRNA:   3'- aGCUgGCGGU-----UCCGGUa--CGCGCUGac -5'
5953 5' -58.5 NC_001806.1 + 23315 0.66 0.784157
Target:  5'- cCGGCCGCCcgGAGGCgGcgGCccGCGACc- -3'
miRNA:   3'- aGCUGGCGG--UUCCGgUa-CG--CGCUGac -5'
5953 5' -58.5 NC_001806.1 + 68261 0.66 0.784157
Target:  5'- aCGACCcggcguuucugGCCAcGGCCAagcUGCGCGcCg- -3'
miRNA:   3'- aGCUGG-----------CGGUuCCGGU---ACGCGCuGac -5'
5953 5' -58.5 NC_001806.1 + 2404 0.66 0.784157
Target:  5'- -aGGCCGCCAugcggcgcagcGGGCCcgagGCGCG-Ca- -3'
miRNA:   3'- agCUGGCGGU-----------UCCGGua--CGCGCuGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.