miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 24791 0.78 0.119705
Target:  5'- gACGAcggcccgggggcCCUGCCGCcgGCGCCgCCCGGGAu -3'
miRNA:   3'- gUGUU------------GGACGGCGa-CGCGG-GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 103026 0.75 0.191816
Target:  5'- gGCGGCC-GCCGCcgucuccaGCGCCUCCAGGGc -3'
miRNA:   3'- gUGUUGGaCGGCGa-------CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 20744 0.75 0.193683
Target:  5'- gGCGGCCU-CCGCUGCuccuccuucccgccgGCCCCUGGGAc -3'
miRNA:   3'- gUGUUGGAcGGCGACG---------------CGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 80298 0.75 0.208197
Target:  5'- gGCAGCCggugGCCacgcccaccacaucuGC-GCGCCCCCGGGGg -3'
miRNA:   3'- gUGUUGGa---CGG---------------CGaCGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 125961 0.74 0.231176
Target:  5'- uCACGACCgcauccacccuCCGCUgGgGCCCCCAGGGu -3'
miRNA:   3'- -GUGUUGGac---------GGCGA-CgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 93011 0.73 0.251535
Target:  5'- uGCAACCUGCUGCggcccgucauggcgGCGCgCCCCAuGGu -3'
miRNA:   3'- gUGUUGGACGGCGa-------------CGCG-GGGGU-CCu -5'
5954 5' -61.9 NC_001806.1 + 129652 0.73 0.273349
Target:  5'- uGCAGgCUGCC-CUGCGCCcgCCCGGGc -3'
miRNA:   3'- gUGUUgGACGGcGACGCGG--GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 111613 0.72 0.285461
Target:  5'- aCGCGACCccaugGCCGCUcccaaccGCGaCCCuCCGGGAu -3'
miRNA:   3'- -GUGUUGGa----CGGCGA-------CGC-GGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 23544 0.72 0.292665
Target:  5'- gGCGGCUgGCgGCgGCaGCCCCCGGGGc -3'
miRNA:   3'- gUGUUGGaCGgCGaCG-CGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 21567 0.72 0.313031
Target:  5'- cCACGgaccGCCUGUCGCcGCGCCCgCCGGc- -3'
miRNA:   3'- -GUGU----UGGACGGCGaCGCGGG-GGUCcu -5'
5954 5' -61.9 NC_001806.1 + 28051 0.72 0.313031
Target:  5'- cCACAgaaGCCccGCCuacGUUGCGaCCCCCAGGGa -3'
miRNA:   3'- -GUGU---UGGa-CGG---CGACGC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 114559 0.72 0.320054
Target:  5'- gCGCGACCUGUCGCgGCagguCCCCCuGGu -3'
miRNA:   3'- -GUGUUGGACGGCGaCGc---GGGGGuCCu -5'
5954 5' -61.9 NC_001806.1 + 102679 0.71 0.334453
Target:  5'- aUACAGCCgGCCGCa-CGCCUgCAGGGa -3'
miRNA:   3'- -GUGUUGGaCGGCGacGCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 77481 0.71 0.349321
Target:  5'- -cCGACCcGCagauGCUGCGCCgCCGGGGc -3'
miRNA:   3'- guGUUGGaCGg---CGACGCGGgGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 132655 0.71 0.349321
Target:  5'- gCGCGggGCCgcgGCCGCUuacgccGCGCUCCUGGGGg -3'
miRNA:   3'- -GUGU--UGGa--CGGCGA------CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 79703 0.71 0.356929
Target:  5'- aCGCucCCUGgCGC-GCGCCaCCCAGGc -3'
miRNA:   3'- -GUGuuGGACgGCGaCGCGG-GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 151716 0.71 0.356929
Target:  5'- cCGCcACCgcuuuaaaggGCCGCgcGCGaCCCCCGGGGg -3'
miRNA:   3'- -GUGuUGGa---------CGGCGa-CGC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 69100 0.71 0.356929
Target:  5'- -uCAGCCcgcgcucgGCCugUGCGCCCCCGGGGa -3'
miRNA:   3'- guGUUGGa-------CGGcgACGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 2677 0.71 0.356929
Target:  5'- gCGCcGCCgUGUgGCUGgGCCCCgGGGGc -3'
miRNA:   3'- -GUGuUGG-ACGgCGACgCGGGGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 6 0.71 0.356929
Target:  5'- cCGCcACCgcuuuaaaggGCCGCgcGCGaCCCCCGGGGg -3'
miRNA:   3'- -GUGuUGGa---------CGGCGa-CGC-GGGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.