miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 6 0.71 0.356929
Target:  5'- cCGCcACCgcuuuaaaggGCCGCgcGCGaCCCCCGGGGg -3'
miRNA:   3'- -GUGuUGGa---------CGGCGa-CGC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 1388 0.7 0.412524
Target:  5'- cCGCcGCCagcacggUGCCGCUGCGgCCCguGGc -3'
miRNA:   3'- -GUGuUGG-------ACGGCGACGCgGGGguCCu -5'
5954 5' -61.9 NC_001806.1 + 1441 0.68 0.521673
Target:  5'- gGCGgcGCCgGCgGCaGgGCCCCCGGGc -3'
miRNA:   3'- gUGU--UGGaCGgCGaCgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 1598 0.66 0.599594
Target:  5'- cCACGuACacggGCCGCagcgGCGCgCCCAGGc -3'
miRNA:   3'- -GUGU-UGga--CGGCGa---CGCGgGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 2677 0.71 0.356929
Target:  5'- gCGCcGCCgUGUgGCUGgGCCCCgGGGGc -3'
miRNA:   3'- -GUGuUGG-ACGgCGACgCGGGGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 2704 0.66 0.629353
Target:  5'- -----gCUGCCGCcGCcaGCCgCCCAGGGg -3'
miRNA:   3'- guguugGACGGCGaCG--CGG-GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 2943 0.66 0.649213
Target:  5'- gGCGGCCgggccggGCCGggacucuugcgcUUGCGCCCCUcccgcggcgcgGGGAg -3'
miRNA:   3'- gUGUUGGa------CGGC------------GACGCGGGGG-----------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 3385 0.68 0.503703
Target:  5'- gACGGCCgccaggucGCCGUcgaagcccucggccaGCGCCUCCAGGAu -3'
miRNA:   3'- gUGUUGGa-------CGGCGa--------------CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 3802 0.69 0.430475
Target:  5'- gGCGGCC-GCCGCgUGCGCcaggCCCCAGc- -3'
miRNA:   3'- gUGUUGGaCGGCG-ACGCG----GGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 3834 0.7 0.38851
Target:  5'- aGCGGCCgGCCGCcaugGCGUagCCCAGGu -3'
miRNA:   3'- gUGUUGGaCGGCGa---CGCGg-GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 4721 0.66 0.629353
Target:  5'- gCGgGGCCUcCCGUUcGCGgCCCCGGGc -3'
miRNA:   3'- -GUgUUGGAcGGCGA-CGCgGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 6810 0.66 0.629353
Target:  5'- gCACGACCcGgagcgucccCUGCUGCGCUcuCCCGGGc -3'
miRNA:   3'- -GUGUUGGaC---------GGCGACGCGG--GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 15546 0.67 0.570038
Target:  5'- -cCAACCcGCaaacaGCacCGCCCCCAGGGg -3'
miRNA:   3'- guGUUGGaCGg----CGacGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 17154 0.68 0.474983
Target:  5'- cCGCuGCCgGUCGCUccaaggGCcCCCCCGGGAa -3'
miRNA:   3'- -GUGuUGGaCGGCGA------CGcGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 17540 0.7 0.413368
Target:  5'- gCACuagguCCUGUCGCUGC-CCCCCAa-- -3'
miRNA:   3'- -GUGuu---GGACGGCGACGcGGGGGUccu -5'
5954 5' -61.9 NC_001806.1 + 20159 0.68 0.474983
Target:  5'- cCGCccCCcGCCGCccggGCccGCCCCCGGGGc -3'
miRNA:   3'- -GUGuuGGaCGGCGa---CG--CGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 20744 0.75 0.193683
Target:  5'- gGCGGCCU-CCGCUGCuccuccuucccgccgGCCCCUGGGAc -3'
miRNA:   3'- gUGUUGGAcGGCGACG---------------CGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 21486 0.69 0.456895
Target:  5'- aCGCAGCCgacGCCGCcgGCGaCCgggccccggCCCGGGGc -3'
miRNA:   3'- -GUGUUGGa--CGGCGa-CGC-GG---------GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 21567 0.72 0.313031
Target:  5'- cCACGgaccGCCUGUCGCcGCGCCCgCCGGc- -3'
miRNA:   3'- -GUGU----UGGACGGCGaCGCGGG-GGUCcu -5'
5954 5' -61.9 NC_001806.1 + 21885 0.7 0.413368
Target:  5'- cCGCGGCCUccgcggGCCGCaucgaGCGCCgCCGGGc -3'
miRNA:   3'- -GUGUUGGA------CGGCGa----CGCGGgGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.