miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 22099 0.66 0.599594
Target:  5'- gGCGGCCUgggcgacaGCCGCccGgGCCUCUGGGGg -3'
miRNA:   3'- gUGUUGGA--------CGGCGa-CgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 22514 0.66 0.6095
Target:  5'- -cCAGCCUgcGCCGCgccuacGCGCCCCUguuGGc -3'
miRNA:   3'- guGUUGGA--CGGCGa-----CGCGGGGGu--CCu -5'
5954 5' -61.9 NC_001806.1 + 22818 0.67 0.57789
Target:  5'- gGCcGCCUGCCGCgggauccuggagGCGCUggCCgAGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----------CGCGG--GGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 23170 0.7 0.375659
Target:  5'- cCGCgGACCUGCUGUuugacaaccagagccUGCGCCCCCugcuGGc -3'
miRNA:   3'- -GUG-UUGGACGGCG---------------ACGCGGGGGu---CCu -5'
5954 5' -61.9 NC_001806.1 + 23544 0.72 0.292665
Target:  5'- gGCGGCUgGCgGCgGCaGCCCCCGGGGc -3'
miRNA:   3'- gUGUUGGaCGgCGaCG-CGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 24092 0.67 0.550529
Target:  5'- gCACAggGCgUGCUGCUGCuGUCCaCgCGGGAc -3'
miRNA:   3'- -GUGU--UGgACGGCGACG-CGGG-G-GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 24408 0.66 0.6095
Target:  5'- aCGC-GCC-GCCGCUGCGCCUgugCCGcGGc -3'
miRNA:   3'- -GUGuUGGaCGGCGACGCGGG---GGU-CCu -5'
5954 5' -61.9 NC_001806.1 + 24791 0.78 0.119705
Target:  5'- gACGAcggcccgggggcCCUGCCGCcgGCGCCgCCCGGGAu -3'
miRNA:   3'- gUGUU------------GGACGGCGa-CGCGG-GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 27136 0.71 0.364653
Target:  5'- gGCGGCCUGggucuuCCGCggaGCUCCCGGGAg -3'
miRNA:   3'- gUGUUGGAC------GGCGacgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 28051 0.72 0.313031
Target:  5'- cCACAgaaGCCccGCCuacGUUGCGaCCCCCAGGGa -3'
miRNA:   3'- -GUGU---UGGa-CGG---CGACGC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 28095 0.67 0.570038
Target:  5'- cCGCGACCcuccaGCCGCauaCGaCCCCCAuGGAg -3'
miRNA:   3'- -GUGUUGGa----CGGCGac-GC-GGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 29794 0.68 0.531231
Target:  5'- aCGCAGaggcGCCGCcGCGCCCCCcgugacgggcGGGGc -3'
miRNA:   3'- -GUGUUgga-CGGCGaCGCGGGGG----------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 29848 0.67 0.570038
Target:  5'- -cCAGCCgGCCGCggcucggacaGCGCCCCCcucGGc -3'
miRNA:   3'- guGUUGGaCGGCGa---------CGCGGGGGu--CCu -5'
5954 5' -61.9 NC_001806.1 + 32934 0.67 0.56026
Target:  5'- aCGCAugcGCCggGCCGUUGUGgggCCCCGGGc -3'
miRNA:   3'- -GUGU---UGGa-CGGCGACGCg--GGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 35547 0.66 0.639286
Target:  5'- -cCAGCgaGCCGCUcgGCGCgCCCGGc- -3'
miRNA:   3'- guGUUGgaCGGCGA--CGCGgGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 37856 0.66 0.619422
Target:  5'- gCGCAcGCCccgUGuCCGCUG-GCCUCCGGGu -3'
miRNA:   3'- -GUGU-UGG---AC-GGCGACgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 41693 0.69 0.430475
Target:  5'- gGCGGCgUGCCGCccgccGUGUccuCCCCGGGAc -3'
miRNA:   3'- gUGUUGgACGGCGa----CGCG---GGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 42228 0.66 0.599594
Target:  5'- --aAACCcgGCCGCcGCGgCCCCGcGGGc -3'
miRNA:   3'- gugUUGGa-CGGCGaCGCgGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 43491 0.66 0.599594
Target:  5'- cCACGAUCgacgggGCCGUgGCgGCCCaUCAGGAc -3'
miRNA:   3'- -GUGUUGGa-----CGGCGaCG-CGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 49265 0.68 0.531231
Target:  5'- gGCGACgaGCCGCccgUGCGCCgucgaCGGGAa -3'
miRNA:   3'- gUGUUGgaCGGCG---ACGCGGgg---GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.