miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 54479 0.67 0.570038
Target:  5'- gAUcACCUGCCGCUcggugGgGUCCCUGGGu -3'
miRNA:   3'- gUGuUGGACGGCGA-----CgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 54659 0.69 0.430475
Target:  5'- aACGGCCgacuuaGCCGCcgGUGaggggucguCCCCCAGGAa -3'
miRNA:   3'- gUGUUGGa-----CGGCGa-CGC---------GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 56804 0.67 0.579857
Target:  5'- aGCAGucCCUGgCGgUGguCGCCCCCGGGc -3'
miRNA:   3'- gUGUU--GGACgGCgAC--GCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 65435 0.66 0.610491
Target:  5'- cCGCAACgaagggagcgggggaUGCCGCg--GCCCCCGGGu -3'
miRNA:   3'- -GUGUUGg--------------ACGGCGacgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 67361 0.67 0.56026
Target:  5'- uCAgGGCCgcccccCCGCgcaugGUGCCCCgCAGGAu -3'
miRNA:   3'- -GUgUUGGac----GGCGa----CGCGGGG-GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 67476 0.67 0.56026
Target:  5'- cCACAGCgUGCUGgc-CGCCCuCCGGGGu -3'
miRNA:   3'- -GUGUUGgACGGCgacGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 68573 0.67 0.56026
Target:  5'- -cCGGCCUGCgcacCGCgGCGgCCCUGGGGc -3'
miRNA:   3'- guGUUGGACG----GCGaCGCgGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 69100 0.71 0.356929
Target:  5'- -uCAGCCcgcgcucgGCCugUGCGCCCCCGGGGa -3'
miRNA:   3'- guGUUGGa-------CGGcgACGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 69686 0.67 0.56026
Target:  5'- gGCgAGCCUGCgGCggGCGCUCgUGGGGg -3'
miRNA:   3'- gUG-UUGGACGgCGa-CGCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 72526 0.67 0.579857
Target:  5'- ----cCCUGCgucgGCgUGgGCCCCCGGGAg -3'
miRNA:   3'- guguuGGACGg---CG-ACgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 73195 0.68 0.531231
Target:  5'- --aGACUcGCCGCUcGCccgaGCCCCCGGGc -3'
miRNA:   3'- gugUUGGaCGGCGA-CG----CGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 77394 0.68 0.502764
Target:  5'- gCGCGGCg-GCCGCgcccGCGCCCCUgcucguGGAu -3'
miRNA:   3'- -GUGUUGgaCGGCGa---CGCGGGGGu-----CCU- -5'
5954 5' -61.9 NC_001806.1 + 77481 0.71 0.349321
Target:  5'- -cCGACCcGCagauGCUGCGCCgCCGGGGc -3'
miRNA:   3'- guGUUGGaCGg---CGACGCGGgGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 77572 0.68 0.512183
Target:  5'- gCugGAUCgGCCGUU-CGCCCCCAGc- -3'
miRNA:   3'- -GugUUGGaCGGCGAcGCGGGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 79703 0.71 0.356929
Target:  5'- aCGCucCCUGgCGC-GCGCCaCCCAGGc -3'
miRNA:   3'- -GUGuuGGACgGCGaCGCGG-GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 80298 0.75 0.208197
Target:  5'- gGCAGCCggugGCCacgcccaccacaucuGC-GCGCCCCCGGGGg -3'
miRNA:   3'- gUGUUGGa---CGG---------------CGaCGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 82193 0.69 0.464989
Target:  5'- uCACAuugguccGCuCUGgCGUaaucGCGCCCCCGGGGg -3'
miRNA:   3'- -GUGU-------UG-GACgGCGa---CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 82791 0.69 0.421869
Target:  5'- --aGGCCaGCCGCUGCGUCCgcgaCAGGu -3'
miRNA:   3'- gugUUGGaCGGCGACGCGGGg---GUCCu -5'
5954 5' -61.9 NC_001806.1 + 84921 0.69 0.456895
Target:  5'- aAgAGCCUGCCGCcucaCGCCCgcaaaCAGGAg -3'
miRNA:   3'- gUgUUGGACGGCGac--GCGGGg----GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 85957 0.7 0.380444
Target:  5'- aGCAGCUUGCgggGCUuggacGCGCCuCCCGGGGg -3'
miRNA:   3'- gUGUUGGACGg--CGA-----CGCGG-GGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.