miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 86942 0.68 0.528356
Target:  5'- gGCGGCCUGCUGCUuguccaggagcacgGCcUCCUCGGGGc -3'
miRNA:   3'- gUGUUGGACGGCGA--------------CGcGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 89522 0.7 0.372492
Target:  5'- gGCGGCgaGCUGCUGCGCggcgCCCCGGc- -3'
miRNA:   3'- gUGUUGgaCGGCGACGCG----GGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 91638 0.68 0.531231
Target:  5'- cCAC-GCCUGCguacacacgaCGCucaUGCGCCUCCGGGc -3'
miRNA:   3'- -GUGuUGGACG----------GCG---ACGCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 93011 0.73 0.251535
Target:  5'- uGCAACCUGCUGCggcccgucauggcgGCGCgCCCCAuGGu -3'
miRNA:   3'- gUGUUGGACGGCGa-------------CGCG-GGGGU-CCu -5'
5954 5' -61.9 NC_001806.1 + 96534 0.66 0.608508
Target:  5'- gCGCcGCCcGCCcCUgGCGCCCCCccaacggGGGAc -3'
miRNA:   3'- -GUGuUGGaCGGcGA-CGCGGGGG-------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 96754 0.68 0.47407
Target:  5'- aGCAGCCgcGCCGCUGCccgacccGgCCCgAGGGu -3'
miRNA:   3'- gUGUUGGa-CGGCGACG-------CgGGGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 100641 0.67 0.579857
Target:  5'- -cCGGCCUGCCGCcGCcgcucgGCCaCCAGGc -3'
miRNA:   3'- guGUUGGACGGCGaCG------CGGgGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 100781 0.69 0.430475
Target:  5'- gGCGGCCaGUCGCcGCGCCCCUcGcGAg -3'
miRNA:   3'- gUGUUGGaCGGCGaCGCGGGGGuC-CU- -5'
5954 5' -61.9 NC_001806.1 + 102679 0.71 0.334453
Target:  5'- aUACAGCCgGCCGCa-CGCCUgCAGGGa -3'
miRNA:   3'- -GUGUUGGaCGGCGacGCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 103026 0.75 0.191816
Target:  5'- gGCGGCC-GCCGCcgucuccaGCGCCUCCAGGGc -3'
miRNA:   3'- gUGUUGGaCGGCGa-------CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 103158 0.68 0.521673
Target:  5'- gGCAGCCgcUGUgCGCUGgGCCUgUAGGAc -3'
miRNA:   3'- gUGUUGG--ACG-GCGACgCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 105438 0.67 0.589711
Target:  5'- uGCGACCUGgCGCgcaCGUUugCCCGGGAg -3'
miRNA:   3'- gUGUUGGACgGCGac-GCGG--GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 106211 0.7 0.38851
Target:  5'- gCACAAUCcagccgccuccgUGuuGCUGCGUUCCCGGGc -3'
miRNA:   3'- -GUGUUGG------------ACggCGACGCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 108154 0.67 0.56026
Target:  5'- aCGCAGCCcgugGCCGCaauUGCGCCC--GGGu -3'
miRNA:   3'- -GUGUUGGa---CGGCG---ACGCGGGggUCCu -5'
5954 5' -61.9 NC_001806.1 + 109062 0.66 0.649213
Target:  5'- aCGCGGCCccgauaaacGcCCGCgGgGCCCCCGcGGAg -3'
miRNA:   3'- -GUGUUGGa--------C-GGCGaCgCGGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 111613 0.72 0.285461
Target:  5'- aCGCGACCccaugGCCGCUcccaaccGCGaCCCuCCGGGAu -3'
miRNA:   3'- -GUGUUGGa----CGGCGA-------CGC-GGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 111808 0.66 0.639286
Target:  5'- aACAcCCUGUCGCucgUGCGCUUUCuGGAg -3'
miRNA:   3'- gUGUuGGACGGCG---ACGCGGGGGuCCU- -5'
5954 5' -61.9 NC_001806.1 + 113957 0.68 0.521673
Target:  5'- gACGGCCaGCUGCUGCaCaacaCCCAGGc -3'
miRNA:   3'- gUGUUGGaCGGCGACGcGg---GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 114559 0.72 0.320054
Target:  5'- gCGCGACCUGUCGCgGCagguCCCCCuGGu -3'
miRNA:   3'- -GUGUUGGACGGCGaCGc---GGGGGuCCu -5'
5954 5' -61.9 NC_001806.1 + 115520 0.67 0.554416
Target:  5'- cCACGGCCaccGCCGCcagcgacguacaguuUaaGCGcCCCCCGGGGu -3'
miRNA:   3'- -GUGUUGGa--CGGCG---------------A--CGC-GGGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.