miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 151716 0.71 0.356929
Target:  5'- cCGCcACCgcuuuaaaggGCCGCgcGCGaCCCCCGGGGg -3'
miRNA:   3'- -GUGuUGGa---------CGGCGa-CGC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 150790 0.68 0.512183
Target:  5'- aGCGGCUUGgUGCggaGCUCCCGGGAg -3'
miRNA:   3'- gUGUUGGACgGCGacgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 147204 0.66 0.599594
Target:  5'- aCGCGGCCccgGCgGCggaagagGCgGCCCCCGcGGGg -3'
miRNA:   3'- -GUGUUGGa--CGgCGa------CG-CGGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 146687 0.66 0.639286
Target:  5'- cCGCAGgCUGCgGaaguccagGCGCCCaCUAGGGu -3'
miRNA:   3'- -GUGUUgGACGgCga------CGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 143652 0.69 0.44799
Target:  5'- gCGCcGCCccccGCCGCUaaaccccauccCGCCCCCGGGAc -3'
miRNA:   3'- -GUGuUGGa---CGGCGAc----------GCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 141565 0.69 0.465893
Target:  5'- gGCAACCgugGCCGCUcauccGUGCC-UCGGGAu -3'
miRNA:   3'- gUGUUGGa--CGGCGA-----CGCGGgGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 139844 0.67 0.593661
Target:  5'- gACcGCCUGCCGCgcggagGCGuuguuauccagcacaCCCCCAuuGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----CGC---------------GGGGGU--CCU- -5'
5954 5' -61.9 NC_001806.1 + 138791 0.68 0.531231
Target:  5'- aAUGGCCga-CGCagGCGCCCCCGGcGAg -3'
miRNA:   3'- gUGUUGGacgGCGa-CGCGGGGGUC-CU- -5'
5954 5' -61.9 NC_001806.1 + 133048 0.66 0.599594
Target:  5'- uGCAacGCCUGCCcugcGCUGCggcaGCUCCUGGGu -3'
miRNA:   3'- gUGU--UGGACGG----CGACG----CGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 132655 0.71 0.349321
Target:  5'- gCGCGggGCCgcgGCCGCUuacgccGCGCUCCUGGGGg -3'
miRNA:   3'- -GUGU--UGGa--CGGCGA------CGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 129652 0.73 0.273349
Target:  5'- uGCAGgCUGCC-CUGCGCCcgCCCGGGc -3'
miRNA:   3'- gUGUUgGACGGcGACGCGG--GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 125961 0.74 0.231176
Target:  5'- uCACGACCgcauccacccuCCGCUgGgGCCCCCAGGGu -3'
miRNA:   3'- -GUGUUGGac---------GGCGA-CgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 124247 0.66 0.639286
Target:  5'- cCACAACauccGCgGCUucaucGCGCCCCuCGGGu -3'
miRNA:   3'- -GUGUUGga--CGgCGA-----CGCGGGG-GUCCu -5'
5954 5' -61.9 NC_001806.1 + 123935 0.66 0.629353
Target:  5'- aCugAACCgcccGCCcCUGCGCagauCCCAGGc -3'
miRNA:   3'- -GugUUGGa---CGGcGACGCGg---GGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 121488 0.68 0.512183
Target:  5'- aGCGACCUgggGUCGCUcUGUCCaCCGGGAa -3'
miRNA:   3'- gUGUUGGA---CGGCGAcGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 121404 0.67 0.56026
Target:  5'- cCGgAGCCgggcGCgUGCUGCGCCuugggCCCGGGGg -3'
miRNA:   3'- -GUgUUGGa---CG-GCGACGCGG-----GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 120865 0.67 0.550529
Target:  5'- gGCGGCCccuggcGCCGcCUG-GuCCCCCGGGGa -3'
miRNA:   3'- gUGUUGGa-----CGGC-GACgC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 119927 0.66 0.6095
Target:  5'- --aGGCCUgcGCCGCagaacgcgucgUGCGCCCCCAc-- -3'
miRNA:   3'- gugUUGGA--CGGCG-----------ACGCGGGGGUccu -5'
5954 5' -61.9 NC_001806.1 + 115520 0.67 0.554416
Target:  5'- cCACGGCCaccGCCGCcagcgacguacaguuUaaGCGcCCCCCGGGGu -3'
miRNA:   3'- -GUGUUGGa--CGGCG---------------A--CGC-GGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 114559 0.72 0.320054
Target:  5'- gCGCGACCUGUCGCgGCagguCCCCCuGGu -3'
miRNA:   3'- -GUGUUGGACGGCGaCGc---GGGGGuCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.