miRNA display CGI


Results 81 - 98 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 138791 0.68 0.531231
Target:  5'- aAUGGCCga-CGCagGCGCCCCCGGcGAg -3'
miRNA:   3'- gUGUUGGacgGCGa-CGCGGGGGUC-CU- -5'
5954 5' -61.9 NC_001806.1 + 91638 0.68 0.531231
Target:  5'- cCAC-GCCUGCguacacacgaCGCucaUGCGCCUCCGGGc -3'
miRNA:   3'- -GUGuUGGACG----------GCG---ACGCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 73195 0.68 0.531231
Target:  5'- --aGACUcGCCGCUcGCccgaGCCCCCGGGc -3'
miRNA:   3'- gugUUGGaCGGCGA-CG----CGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 49265 0.68 0.531231
Target:  5'- gGCGACgaGCCGCccgUGCGCCgucgaCGGGAa -3'
miRNA:   3'- gUGUUGgaCGGCG---ACGCGGgg---GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 86942 0.68 0.528356
Target:  5'- gGCGGCCUGCUGCUuguccaggagcacgGCcUCCUCGGGGc -3'
miRNA:   3'- gUGUUGGACGGCGA--------------CGcGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 32934 0.67 0.56026
Target:  5'- aCGCAugcGCCggGCCGUUGUGgggCCCCGGGc -3'
miRNA:   3'- -GUGU---UGGa-CGGCGACGCg--GGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 67361 0.67 0.56026
Target:  5'- uCAgGGCCgcccccCCGCgcaugGUGCCCCgCAGGAu -3'
miRNA:   3'- -GUgUUGGac----GGCGa----CGCGGGG-GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 72526 0.67 0.579857
Target:  5'- ----cCCUGCgucgGCgUGgGCCCCCGGGAg -3'
miRNA:   3'- guguuGGACGg---CG-ACgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 22818 0.67 0.57789
Target:  5'- gGCcGCCUGCCGCgggauccuggagGCGCUggCCgAGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----------CGCGG--GGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 28095 0.67 0.570038
Target:  5'- cCGCGACCcuccaGCCGCauaCGaCCCCCAuGGAg -3'
miRNA:   3'- -GUGUUGGa----CGGCGac-GC-GGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 54479 0.67 0.570038
Target:  5'- gAUcACCUGCCGCUcggugGgGUCCCUGGGu -3'
miRNA:   3'- gUGuUGGACGGCGA-----CgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 29848 0.67 0.570038
Target:  5'- -cCAGCCgGCCGCggcucggacaGCGCCCCCcucGGc -3'
miRNA:   3'- guGUUGGaCGGCGa---------CGCGGGGGu--CCu -5'
5954 5' -61.9 NC_001806.1 + 15546 0.67 0.570038
Target:  5'- -cCAACCcGCaaacaGCacCGCCCCCAGGGg -3'
miRNA:   3'- guGUUGGaCGg----CGacGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 121404 0.67 0.56026
Target:  5'- cCGgAGCCgggcGCgUGCUGCGCCuugggCCCGGGGg -3'
miRNA:   3'- -GUgUUGGa---CG-GCGACGCGG-----GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 68573 0.67 0.56026
Target:  5'- -cCGGCCUGCgcacCGCgGCGgCCCUGGGGc -3'
miRNA:   3'- guGUUGGACG----GCGaCGCgGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 108154 0.67 0.56026
Target:  5'- aCGCAGCCcgugGCCGCaauUGCGCCC--GGGu -3'
miRNA:   3'- -GUGUUGGa---CGGCG---ACGCGGGggUCCu -5'
5954 5' -61.9 NC_001806.1 + 69686 0.67 0.56026
Target:  5'- gGCgAGCCUGCgGCggGCGCUCgUGGGGg -3'
miRNA:   3'- gUG-UUGGACGgCGa-CGCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 103158 0.68 0.521673
Target:  5'- gGCAGCCgcUGUgCGCUGgGCCUgUAGGAc -3'
miRNA:   3'- gUGUUGG--ACG-GCGACgCGGGgGUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.