miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 35547 0.66 0.639286
Target:  5'- -cCAGCgaGCCGCUcgGCGCgCCCGGc- -3'
miRNA:   3'- guGUUGgaCGGCGA--CGCGgGGGUCcu -5'
5954 5' -61.9 NC_001806.1 + 111808 0.66 0.639286
Target:  5'- aACAcCCUGUCGCucgUGCGCUUUCuGGAg -3'
miRNA:   3'- gUGUuGGACGGCG---ACGCGGGGGuCCU- -5'
5954 5' -61.9 NC_001806.1 + 124247 0.66 0.639286
Target:  5'- cCACAACauccGCgGCUucaucGCGCCCCuCGGGu -3'
miRNA:   3'- -GUGUUGga--CGgCGA-----CGCGGGG-GUCCu -5'
5954 5' -61.9 NC_001806.1 + 146687 0.66 0.639286
Target:  5'- cCGCAGgCUGCgGaaguccagGCGCCCaCUAGGGu -3'
miRNA:   3'- -GUGUUgGACGgCga------CGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 2943 0.66 0.649213
Target:  5'- gGCGGCCgggccggGCCGggacucuugcgcUUGCGCCCCUcccgcggcgcgGGGAg -3'
miRNA:   3'- gUGUUGGa------CGGC------------GACGCGGGGG-----------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 22514 0.66 0.6095
Target:  5'- -cCAGCCUgcGCCGCgccuacGCGCCCCUguuGGc -3'
miRNA:   3'- guGUUGGA--CGGCGa-----CGCGGGGGu--CCu -5'
5954 5' -61.9 NC_001806.1 + 96534 0.66 0.608508
Target:  5'- gCGCcGCCcGCCcCUgGCGCCCCCccaacggGGGAc -3'
miRNA:   3'- -GUGuUGGaCGGcGA-CGCGGGGG-------UCCU- -5'
5954 5' -61.9 NC_001806.1 + 28095 0.67 0.570038
Target:  5'- cCGCGACCcuccaGCCGCauaCGaCCCCCAuGGAg -3'
miRNA:   3'- -GUGUUGGa----CGGCGac-GC-GGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 22818 0.67 0.57789
Target:  5'- gGCcGCCUGCCGCgggauccuggagGCGCUggCCgAGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----------CGCGG--GGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 72526 0.67 0.579857
Target:  5'- ----cCCUGCgucgGCgUGgGCCCCCGGGAg -3'
miRNA:   3'- guguuGGACGg---CG-ACgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 56804 0.67 0.579857
Target:  5'- aGCAGucCCUGgCGgUGguCGCCCCCGGGc -3'
miRNA:   3'- gUGUU--GGACgGCgAC--GCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 100641 0.67 0.579857
Target:  5'- -cCGGCCUGCCGCcGCcgcucgGCCaCCAGGc -3'
miRNA:   3'- guGUUGGACGGCGaCG------CGGgGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 105438 0.67 0.589711
Target:  5'- uGCGACCUGgCGCgcaCGUUugCCCGGGAg -3'
miRNA:   3'- gUGUUGGACgGCGac-GCGG--GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 139844 0.67 0.593661
Target:  5'- gACcGCCUGCCGCgcggagGCGuuguuauccagcacaCCCCCAuuGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----CGC---------------GGGGGU--CCU- -5'
5954 5' -61.9 NC_001806.1 + 133048 0.66 0.599594
Target:  5'- uGCAacGCCUGCCcugcGCUGCggcaGCUCCUGGGu -3'
miRNA:   3'- gUGU--UGGACGG----CGACG----CGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 22099 0.66 0.599594
Target:  5'- gGCGGCCUgggcgacaGCCGCccGgGCCUCUGGGGg -3'
miRNA:   3'- gUGUUGGA--------CGGCGa-CgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 1598 0.66 0.599594
Target:  5'- cCACGuACacggGCCGCagcgGCGCgCCCAGGc -3'
miRNA:   3'- -GUGU-UGga--CGGCGa---CGCGgGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 42228 0.66 0.599594
Target:  5'- --aAACCcgGCCGCcGCGgCCCCGcGGGc -3'
miRNA:   3'- gugUUGGa-CGGCGaCGCgGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 43491 0.66 0.599594
Target:  5'- cCACGAUCgacgggGCCGUgGCgGCCCaUCAGGAc -3'
miRNA:   3'- -GUGUUGGa-----CGGCGaCG-CGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 147204 0.66 0.599594
Target:  5'- aCGCGGCCccgGCgGCggaagagGCgGCCCCCGcGGGg -3'
miRNA:   3'- -GUGUUGGa--CGgCGa------CG-CGGGGGU-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.