miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5954 5' -61.9 NC_001806.1 + 43491 0.66 0.599594
Target:  5'- cCACGAUCgacgggGCCGUgGCgGCCCaUCAGGAc -3'
miRNA:   3'- -GUGUUGGa-----CGGCGaCG-CGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 147204 0.66 0.599594
Target:  5'- aCGCGGCCccgGCgGCggaagagGCgGCCCCCGcGGGg -3'
miRNA:   3'- -GUGUUGGa--CGgCGa------CG-CGGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 139844 0.67 0.593661
Target:  5'- gACcGCCUGCCGCgcggagGCGuuguuauccagcacaCCCCCAuuGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----CGC---------------GGGGGU--CCU- -5'
5954 5' -61.9 NC_001806.1 + 105438 0.67 0.589711
Target:  5'- uGCGACCUGgCGCgcaCGUUugCCCGGGAg -3'
miRNA:   3'- gUGUUGGACgGCGac-GCGG--GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 72526 0.67 0.579857
Target:  5'- ----cCCUGCgucgGCgUGgGCCCCCGGGAg -3'
miRNA:   3'- guguuGGACGg---CG-ACgCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 56804 0.67 0.579857
Target:  5'- aGCAGucCCUGgCGgUGguCGCCCCCGGGc -3'
miRNA:   3'- gUGUU--GGACgGCgAC--GCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 100641 0.67 0.579857
Target:  5'- -cCGGCCUGCCGCcGCcgcucgGCCaCCAGGc -3'
miRNA:   3'- guGUUGGACGGCGaCG------CGGgGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 22818 0.67 0.57789
Target:  5'- gGCcGCCUGCCGCgggauccuggagGCGCUggCCgAGGGc -3'
miRNA:   3'- gUGuUGGACGGCGa-----------CGCGG--GGgUCCU- -5'
5954 5' -61.9 NC_001806.1 + 15546 0.67 0.570038
Target:  5'- -cCAACCcGCaaacaGCacCGCCCCCAGGGg -3'
miRNA:   3'- guGUUGGaCGg----CGacGCGGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 29848 0.67 0.570038
Target:  5'- -cCAGCCgGCCGCggcucggacaGCGCCCCCcucGGc -3'
miRNA:   3'- guGUUGGaCGGCGa---------CGCGGGGGu--CCu -5'
5954 5' -61.9 NC_001806.1 + 54479 0.67 0.570038
Target:  5'- gAUcACCUGCCGCUcggugGgGUCCCUGGGu -3'
miRNA:   3'- gUGuUGGACGGCGA-----CgCGGGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 28095 0.67 0.570038
Target:  5'- cCGCGACCcuccaGCCGCauaCGaCCCCCAuGGAg -3'
miRNA:   3'- -GUGUUGGa----CGGCGac-GC-GGGGGU-CCU- -5'
5954 5' -61.9 NC_001806.1 + 67476 0.67 0.56026
Target:  5'- cCACAGCgUGCUGgc-CGCCCuCCGGGGu -3'
miRNA:   3'- -GUGUUGgACGGCgacGCGGG-GGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 32934 0.67 0.56026
Target:  5'- aCGCAugcGCCggGCCGUUGUGgggCCCCGGGc -3'
miRNA:   3'- -GUGU---UGGa-CGGCGACGCg--GGGGUCCu -5'
5954 5' -61.9 NC_001806.1 + 67361 0.67 0.56026
Target:  5'- uCAgGGCCgcccccCCGCgcaugGUGCCCCgCAGGAu -3'
miRNA:   3'- -GUgUUGGac----GGCGa----CGCGGGG-GUCCU- -5'
5954 5' -61.9 NC_001806.1 + 69686 0.67 0.56026
Target:  5'- gGCgAGCCUGCgGCggGCGCUCgUGGGGg -3'
miRNA:   3'- gUG-UUGGACGgCGa-CGCGGGgGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 108154 0.67 0.56026
Target:  5'- aCGCAGCCcgugGCCGCaauUGCGCCC--GGGu -3'
miRNA:   3'- -GUGUUGGa---CGGCG---ACGCGGGggUCCu -5'
5954 5' -61.9 NC_001806.1 + 68573 0.67 0.56026
Target:  5'- -cCGGCCUGCgcacCGCgGCGgCCCUGGGGc -3'
miRNA:   3'- guGUUGGACG----GCGaCGCgGGGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 121404 0.67 0.56026
Target:  5'- cCGgAGCCgggcGCgUGCUGCGCCuugggCCCGGGGg -3'
miRNA:   3'- -GUgUUGGa---CG-GCGACGCGG-----GGGUCCU- -5'
5954 5' -61.9 NC_001806.1 + 115520 0.67 0.554416
Target:  5'- cCACGGCCaccGCCGCcagcgacguacaguuUaaGCGcCCCCCGGGGu -3'
miRNA:   3'- -GUGUUGGa--CGGCG---------------A--CGC-GGGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.