miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 135974 0.66 0.89122
Target:  5'- gAGGCgCGAGGCGGCCG---AC-CCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGGUacgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75718 0.66 0.89122
Target:  5'- uGGGCCGccGACguggaGGCCGUGCugGaCCGc -3'
miRNA:   3'- gUCCGGCu-UUG-----CCGGUACGugU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 134299 0.66 0.890544
Target:  5'- aGGGCCGAGagaacggGgGGCgGguUGUugGCCAGc -3'
miRNA:   3'- gUCCGGCUU-------UgCCGgU--ACGugUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75477 0.66 0.890544
Target:  5'- cCAGGCCGcGACGcGCgcgaccaCcgGCGCGCgGGa -3'
miRNA:   3'- -GUCCGGCuUUGC-CG-------GuaCGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 112852 0.66 0.884362
Target:  5'- -cGGUCauGGAACGguuuGCCGcGCACGCCGGg -3'
miRNA:   3'- guCCGG--CUUUGC----CGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 132188 0.66 0.884362
Target:  5'- uGGGCgCGccuGGCGGCCAUucGCgACACCc- -3'
miRNA:   3'- gUCCG-GCu--UUGCCGGUA--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 57048 0.66 0.884362
Target:  5'- gGGGCCGggGCccccGGC--UGCGUGCCGGg -3'
miRNA:   3'- gUCCGGCuuUG----CCGguACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 78785 0.66 0.884362
Target:  5'- gCGGGCCGGAcGCcGCCuUGCGCgauGCCGu -3'
miRNA:   3'- -GUCCGGCUU-UGcCGGuACGUG---UGGUc -5'
5956 3' -56.4 NC_001806.1 + 91007 0.66 0.884362
Target:  5'- gCGGGCgCGAcggcGGCGGCaaggGCGCGgCGGg -3'
miRNA:   3'- -GUCCG-GCU----UUGCCGgua-CGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 144615 0.66 0.884362
Target:  5'- --aGCCGggGCGGCCAagGgGCGUCGGc -3'
miRNA:   3'- gucCGGCuuUGCCGGUa-CgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75245 0.66 0.884362
Target:  5'- -uGGUCGAcgcgguGACGGCCcuggGCGCggccGCCAGc -3'
miRNA:   3'- guCCGGCU------UUGCCGGua--CGUG----UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 129673 0.67 0.846796
Target:  5'- cCGGGCCGccGAGCGGCCcgucuccGgACGCCu- -3'
miRNA:   3'- -GUCCGGC--UUUGCCGGua-----CgUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 30916 0.67 0.853944
Target:  5'- gGGGCCGuccccgcGGGCGGCCuacGCGCuACCu- -3'
miRNA:   3'- gUCCGGC-------UUUGCCGGua-CGUG-UGGuc -5'
5956 3' -56.4 NC_001806.1 + 36383 0.67 0.846796
Target:  5'- ---cCCGAcgcuaAACGGCCGcGCACACCGc -3'
miRNA:   3'- guccGGCU-----UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 51232 0.67 0.854728
Target:  5'- gCGGGucCCGAccgAACGGgcgucaCCAUGCAgCGCCGGa -3'
miRNA:   3'- -GUCC--GGCU---UUGCC------GGUACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 79490 0.67 0.854728
Target:  5'- uGGGCCGGcagucACGGCUcgcgaaGCACgACCGGg -3'
miRNA:   3'- gUCCGGCUu----UGCCGGua----CGUG-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 122885 0.67 0.854728
Target:  5'- -cGGCCGAgaagAGCGGCgaGUGCucGCAgCAGu -3'
miRNA:   3'- guCCGGCU----UUGCCGg-UACG--UGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 136534 0.67 0.854728
Target:  5'- aCGGGCCGcucGGGCcGCCcgGCGCAaagCAGg -3'
miRNA:   3'- -GUCCGGC---UUUGcCGGuaCGUGUg--GUC- -5'
5956 3' -56.4 NC_001806.1 + 1463 0.67 0.854728
Target:  5'- cCGGGCCGucguCGucGCCGcGCAgCACCAGc -3'
miRNA:   3'- -GUCCGGCuuu-GC--CGGUaCGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 28185 0.67 0.846796
Target:  5'- gGGGCCG-GGC-GCCAUGUcugggGCGCCAu -3'
miRNA:   3'- gUCCGGCuUUGcCGGUACG-----UGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.