miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 3183 0.67 0.813176
Target:  5'- -cGGCCacGGCGGCCucgcUGC-CGCCGGc -3'
miRNA:   3'- guCCGGcuUUGCCGGu---ACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 71341 0.67 0.846796
Target:  5'- gAGGCCuauGGGcACGGCC---CACGCCAGg -3'
miRNA:   3'- gUCCGG---CUU-UGCCGGuacGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3447 0.67 0.846796
Target:  5'- cCAGGCaCucGACGGCCAcGCG-GCCGGc -3'
miRNA:   3'- -GUCCG-GcuUUGCCGGUaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 9160 0.67 0.846796
Target:  5'- aGGGCCaucgggGAgacAACGGCCGUGUAgcCCGGg -3'
miRNA:   3'- gUCCGG------CU---UUGCCGGUACGUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 92981 0.67 0.854728
Target:  5'- cCGGGCgCGuGGACGuCCAUGUuCGCCAGc -3'
miRNA:   3'- -GUCCG-GC-UUUGCcGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1463 0.67 0.854728
Target:  5'- cCGGGCCGucguCGucGCCGcGCAgCACCAGc -3'
miRNA:   3'- -GUCCGGCuuu-GC--CGGUaCGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 136534 0.67 0.854728
Target:  5'- aCGGGCCGcucGGGCcGCCcgGCGCAaagCAGg -3'
miRNA:   3'- -GUCCGGC---UUUGcCGGuaCGUGUg--GUC- -5'
5956 3' -56.4 NC_001806.1 + 122885 0.67 0.854728
Target:  5'- -cGGCCGAgaagAGCGGCgaGUGCucGCAgCAGu -3'
miRNA:   3'- guCCGGCU----UUGCCGg-UACG--UGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 79490 0.67 0.854728
Target:  5'- uGGGCCGGcagucACGGCUcgcgaaGCACgACCGGg -3'
miRNA:   3'- gUCCGGCUu----UGCCGGua----CGUG-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 51232 0.67 0.854728
Target:  5'- gCGGGucCCGAccgAACGGgcgucaCCAUGCAgCGCCGGa -3'
miRNA:   3'- -GUCC--GGCU---UUGCC------GGUACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 36383 0.67 0.846796
Target:  5'- ---cCCGAcgcuaAACGGCCGcGCACACCGc -3'
miRNA:   3'- guccGGCU-----UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 30916 0.67 0.853944
Target:  5'- gGGGCCGuccccgcGGGCGGCCuacGCGCuACCu- -3'
miRNA:   3'- gUCCGGC-------UUUGCCGGua-CGUG-UGGuc -5'
5956 3' -56.4 NC_001806.1 + 129673 0.67 0.846796
Target:  5'- cCGGGCCGccGAGCGGCCcgucuccGgACGCCu- -3'
miRNA:   3'- -GUCCGGC--UUUGCCGGua-----CgUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 28185 0.67 0.846796
Target:  5'- gGGGCCG-GGC-GCCAUGUcugggGCGCCAu -3'
miRNA:   3'- gUCCGGCuUUGcCGGUACG-----UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 92920 0.68 0.804336
Target:  5'- gCAGGgCGggGCgGGCC-UGgAgGCCGGg -3'
miRNA:   3'- -GUCCgGCuuUG-CCGGuACgUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 67793 0.68 0.804336
Target:  5'- -uGGCCGAc-UGGCCcgGCGCGuCCGu -3'
miRNA:   3'- guCCGGCUuuGCCGGuaCGUGU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 151569 0.68 0.804336
Target:  5'- gGGGCCGcgauGGCGGCgGcgGCGgGCCAu -3'
miRNA:   3'- gUCCGGCu---UUGCCGgUa-CGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 151691 0.68 0.804336
Target:  5'- -cGGCCGggGgGGCCcgggcUGCcCGCCGc -3'
miRNA:   3'- guCCGGCuuUgCCGGu----ACGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 133469 0.68 0.804336
Target:  5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3'
miRNA:   3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 76486 0.68 0.803444
Target:  5'- -uGGCCGAuaccaagGACGccGUgGUGCGCGCCAa -3'
miRNA:   3'- guCCGGCU-------UUGC--CGgUACGUGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.