Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 50098 | 0.69 | 0.728706 |
Target: 5'- gGGGCC---GCGGCCGUGCcguuacugaGCGCgGGg -3' miRNA: 3'- gUCCGGcuuUGCCGGUACG---------UGUGgUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 29446 | 0.69 | 0.718776 |
Target: 5'- gAGGCCGAGGaGGCCGUcagggcggGCACGgCCGu -3' miRNA: 3'- gUCCGGCUUUgCCGGUA--------CGUGU-GGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24012 | 0.69 | 0.718776 |
Target: 5'- -uGGCC-AAcCGGCUGUGCGgGCCGGa -3' miRNA: 3'- guCCGGcUUuGCCGGUACGUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151448 | 0.69 | 0.70877 |
Target: 5'- gGGGCggcggCGggGCGGCCGcggGCGCGCUc- -3' miRNA: 3'- gUCCG-----GCuuUGCCGGUa--CGUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151289 | 0.69 | 0.70877 |
Target: 5'- gGGGCCGGggggcggcggcgGugGGCCggGCcucugGCGCCGGc -3' miRNA: 3'- gUCCGGCU------------UugCCGGuaCG-----UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151544 | 0.69 | 0.70877 |
Target: 5'- uGGGCCcGGGCGGCCggGgGCGgCGGg -3' miRNA: 3'- gUCCGGcUUUGCCGGuaCgUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 145013 | 0.69 | 0.728706 |
Target: 5'- gGGGCCccacAACGGCCcgGCGCAUg-- -3' miRNA: 3'- gUCCGGcu--UUGCCGGuaCGUGUGguc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2783 | 0.69 | 0.728706 |
Target: 5'- --cGCCGcgGCGGCCcgGgGCGCCGc -3' miRNA: 3'- gucCGGCuuUGCCGGuaCgUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 147703 | 0.69 | 0.748305 |
Target: 5'- gCGGGCCccgGAGGCGGCgcucGCACGCaCGGg -3' miRNA: 3'- -GUCCGG---CUUUGCCGgua-CGUGUG-GUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 99772 | 0.69 | 0.748305 |
Target: 5'- aGGGCCGGGugGGUCGuUGUugGuuCCGGu -3' miRNA: 3'- gUCCGGCUUugCCGGU-ACGugU--GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 93494 | 0.69 | 0.748305 |
Target: 5'- gAGGCCGAGGCccuagucaGCCAacucgGCaACGCCGGg -3' miRNA: 3'- gUCCGGCUUUGc-------CGGUa----CG-UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 38513 | 0.69 | 0.738552 |
Target: 5'- gGGGCUGGGgugucggauAUGGCCucugguggugGCGCACCGGu -3' miRNA: 3'- gUCCGGCUU---------UGCCGGua--------CGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 34290 | 0.69 | 0.738552 |
Target: 5'- gGGGCgGGAugggguuuaGCGGCgGggggcgGCGCGCCGGa -3' miRNA: 3'- gUCCGgCUU---------UGCCGgUa-----CGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 1714 | 0.69 | 0.738552 |
Target: 5'- gAGGCCGccgccCGGCCGUccaGCGCCGGc -3' miRNA: 3'- gUCCGGCuuu--GCCGGUAcg-UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23468 | 0.69 | 0.732655 |
Target: 5'- cCGGGCCGccgcggcgcAGGCccgcccgcgccccguGGCCGUGuCGCGCCGGc -3' miRNA: 3'- -GUCCGGC---------UUUG---------------CCGGUAC-GUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 26997 | 0.7 | 0.698699 |
Target: 5'- gCGGGCCGAccgGGCUcgGUuccgGCGCCGGg -3' miRNA: 3'- -GUCCGGCUuugCCGGuaCG----UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 36206 | 0.7 | 0.678398 |
Target: 5'- --uGCCGcgcGGGCGGCCAUGC-CGCUGGa -3' miRNA: 3'- gucCGGC---UUUGCCGGUACGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 128311 | 0.7 | 0.678398 |
Target: 5'- uGGGUCGggGCcagcuccaucaGGCCGUGCACcugACgCAGa -3' miRNA: 3'- gUCCGGCuuUG-----------CCGGUACGUG---UG-GUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 106757 | 0.7 | 0.668185 |
Target: 5'- gCGGGCCGAcAACGGCUccGCGCuggacGCCu- -3' miRNA: 3'- -GUCCGGCU-UUGCCGGuaCGUG-----UGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 84239 | 0.7 | 0.668185 |
Target: 5'- -cGuGCUGAAacACGGCCGggggcgcggGCGCACCGGc -3' miRNA: 3'- guC-CGGCUU--UGCCGGUa--------CGUGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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