miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 71692 0.7 0.668185
Target:  5'- aCAGGCCGGGucucUGGCCAgcaggGCACAUa-- -3'
miRNA:   3'- -GUCCGGCUUu---GCCGGUa----CGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 81344 0.7 0.668185
Target:  5'- gCGGGCCGcaaccAGGCGGCCGggGCGuCGCCc- -3'
miRNA:   3'- -GUCCGGC-----UUUGCCGGUa-CGU-GUGGuc -5'
5956 3' -56.4 NC_001806.1 + 84239 0.7 0.668185
Target:  5'- -cGuGCUGAAacACGGCCGggggcgcggGCGCACCGGc -3'
miRNA:   3'- guC-CGGCUU--UGCCGGUa--------CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 91163 0.7 0.698699
Target:  5'- aGGGCCaGGAcACGGCCGcgGCccGCGCCAa -3'
miRNA:   3'- gUCCGG-CUU-UGCCGGUa-CG--UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 26997 0.7 0.698699
Target:  5'- gCGGGCCGAccgGGCUcgGUuccgGCGCCGGg -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCG----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 36206 0.7 0.678398
Target:  5'- --uGCCGcgcGGGCGGCCAUGC-CGCUGGa -3'
miRNA:   3'- gucCGGC---UUUGCCGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 128311 0.7 0.678398
Target:  5'- uGGGUCGggGCcagcuccaucaGGCCGUGCACcugACgCAGa -3'
miRNA:   3'- gUCCGGCuuUG-----------CCGGUACGUG---UG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 106757 0.7 0.668185
Target:  5'- gCGGGCCGAcAACGGCUccGCGCuggacGCCu- -3'
miRNA:   3'- -GUCCGGCU-UUGCCGGuaCGUG-----UGGuc -5'
5956 3' -56.4 NC_001806.1 + 11930 0.71 0.586121
Target:  5'- aUAGGCCGA----GCCGuUGUACGCCAGa -3'
miRNA:   3'- -GUCCGGCUuugcCGGU-ACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 125893 0.71 0.596339
Target:  5'- gGGGUuuuaCGAGGCGGCCAcGCAaaACCAGg -3'
miRNA:   3'- gUCCG----GCUUUGCCGGUaCGUg-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 30636 0.71 0.596339
Target:  5'- aGGGCCGGGggggcGCGGCCAgggUGgGC-CCGGg -3'
miRNA:   3'- gUCCGGCUU-----UGCCGGU---ACgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 43502 0.71 0.606584
Target:  5'- gGGGCCGugGCGGCCcaucaggacaagAUGCgGCGCCuGg -3'
miRNA:   3'- gUCCGGCuuUGCCGG------------UACG-UGUGGuC- -5'
5956 3' -56.4 NC_001806.1 + 24848 0.71 0.616849
Target:  5'- aCGGGCCGcAGCGGCacCGUGCugGCg-- -3'
miRNA:   3'- -GUCCGGCuUUGCCG--GUACGugUGguc -5'
5956 3' -56.4 NC_001806.1 + 2926 0.71 0.627124
Target:  5'- gCGGGCCGccgccuccGGGCGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGC--------UUUGCCGGuaC-GUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 93290 0.71 0.627124
Target:  5'- gAGGgCGggGCGGCCGU---CGCCAGu -3'
miRNA:   3'- gUCCgGCuuUGCCGGUAcguGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 68276 0.71 0.637404
Target:  5'- -uGGCC---ACGGCCAagcUGCGCGCCGc -3'
miRNA:   3'- guCCGGcuuUGCCGGU---ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 6794 0.71 0.637404
Target:  5'- -cGGCCaGAACcGCCGUGCACGacCCGGa -3'
miRNA:   3'- guCCGGcUUUGcCGGUACGUGU--GGUC- -5'
5956 3' -56.4 NC_001806.1 + 118813 0.72 0.555694
Target:  5'- cCAGGUCGAAAUccagacucgGGCuCAUGC-CACCGGc -3'
miRNA:   3'- -GUCCGGCUUUG---------CCG-GUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 73992 0.72 0.555694
Target:  5'- -cGGCCGggGCGGCCccGCagggggcuccGCGCCc- -3'
miRNA:   3'- guCCGGCuuUGCCGGuaCG----------UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 3359 0.72 0.545649
Target:  5'- gCGGGCCGGGcccCGGCCAgccccgggacgGC-CGCCAGg -3'
miRNA:   3'- -GUCCGGCUUu--GCCGGUa----------CGuGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.