miRNA display CGI


Results 121 - 140 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 75212 0.72 0.575936
Target:  5'- -cGGUgGAuGCGGCCGUGCgggcGCACCGc -3'
miRNA:   3'- guCCGgCUuUGCCGGUACG----UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 46142 0.73 0.486811
Target:  5'- uGGGuCCGGAGgGGCCGgacGCACACCc- -3'
miRNA:   3'- gUCC-GGCUUUgCCGGUa--CGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 54651 0.73 0.486811
Target:  5'- uGGGCCGuAACGGCCGacuuaGC-CGCCGGu -3'
miRNA:   3'- gUCCGGCuUUGCCGGUa----CGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 133236 0.73 0.496421
Target:  5'- gCGGGCCaucGAGACGGCCGUGgGaGCCGu -3'
miRNA:   3'- -GUCCGG---CUUUGCCGGUACgUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 150981 0.73 0.496421
Target:  5'- gCGGGCCc--ACGaGCCGcgGCGCGCCAGg -3'
miRNA:   3'- -GUCCGGcuuUGC-CGGUa-CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3819 0.73 0.496421
Target:  5'- cCAGGCCccagccGAAGCGGCCG-GC-CGCCAu -3'
miRNA:   3'- -GUCCGG------CUUUGCCGGUaCGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 24673 0.73 0.525743
Target:  5'- gGGGCgCGAGGCGGU---GCGCGCCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGguaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 63131 0.74 0.431147
Target:  5'- gCAGGCCGuguGCaGGCCcUGCAUGCCGa -3'
miRNA:   3'- -GUCCGGCuu-UG-CCGGuACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 46435 0.74 0.431147
Target:  5'- -cGGUCGGgcgccuGGCGGCCAUGCAUGCcCGGa -3'
miRNA:   3'- guCCGGCU------UUGCCGGUACGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 141418 0.74 0.440169
Target:  5'- cCAGGCCGggGCGGC---GCGCgGCCAa -3'
miRNA:   3'- -GUCCGGCuuUGCCGguaCGUG-UGGUc -5'
5956 3' -56.4 NC_001806.1 + 10727 0.74 0.458528
Target:  5'- gCGGGaCCGGAGC-GCgCAUGCACGCCGc -3'
miRNA:   3'- -GUCC-GGCUUUGcCG-GUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 88673 0.74 0.46786
Target:  5'- aGGGCC---GCGGCCAUGCGCuCgCAGa -3'
miRNA:   3'- gUCCGGcuuUGCCGGUACGUGuG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 128036 0.74 0.46786
Target:  5'- cCAGGCCGAcgaugcccguGGCGGCCAcgGCcC-CCAGg -3'
miRNA:   3'- -GUCCGGCU----------UUGCCGGUa-CGuGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 27034 0.75 0.37939
Target:  5'- gAGGCCGAGGCGGUCAU-CGgGCCGu -3'
miRNA:   3'- gUCCGGCUUUGCCGGUAcGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 131866 0.75 0.387723
Target:  5'- cCAGGCCGucguGGCGGCCGccCGCGCCGc -3'
miRNA:   3'- -GUCCGGCu---UUGCCGGUacGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 102507 0.75 0.404747
Target:  5'- -cGGucCCGAucaccGCGGCCAgGCACGCCAGg -3'
miRNA:   3'- guCC--GGCUu----UGCCGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1904 0.75 0.404747
Target:  5'- cCGGGCCGAAcacGCGGCCcgagGCcaGCACCGu -3'
miRNA:   3'- -GUCCGGCUU---UGCCGGua--CG--UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 1790 0.75 0.422235
Target:  5'- cCGGGCCGAAGCG--CGUGCGCACgCGGu -3'
miRNA:   3'- -GUCCGGCUUUGCcgGUACGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 2521 0.76 0.371177
Target:  5'- -cGGCgGggGCgGGCCcgGCGCACCGc -3'
miRNA:   3'- guCCGgCuuUG-CCGGuaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 50667 0.76 0.371177
Target:  5'- cCGGcGCCGGgacgacgcGGCGGCCAcGCGCGCCAu -3'
miRNA:   3'- -GUC-CGGCU--------UUGCCGGUaCGUGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.