Results 141 - 150 of 150 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5956 | 3' | -56.4 | NC_001806.1 | + | 73454 | 0.76 | 0.355119 |
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Target: 5'- cCAGGCCGGggUGGCCGgcccgGC-CGCCGc -3' miRNA: 3'- -GUCCGGCUuuGCCGGUa----CGuGUGGUc -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 89791 | 0.76 | 0.363087 |
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Target: 5'- gGGGCUGggGCGGaCCG-GCACGCCc- -3' miRNA: 3'- gUCCGGCuuUGCC-GGUaCGUGUGGuc -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 50667 | 0.76 | 0.371177 |
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Target: 5'- cCGGcGCCGGgacgacgcGGCGGCCAcGCGCGCCAu -3' miRNA: 3'- -GUC-CGGCU--------UUGCCGGUaCGUGUGGUc -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 2521 | 0.76 | 0.371177 |
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Target: 5'- -cGGCgGggGCgGGCCcgGCGCACCGc -3' miRNA: 3'- guCCGgCuuUG-CCGGuaCGUGUGGUc -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 62838 | 0.76 | 0.371177 |
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Target: 5'- --cGCCGAGGCGGCgGUGgGCAUCAGc -3' miRNA: 3'- gucCGGCUUUGCCGgUACgUGUGGUC- -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 23067 | 0.77 | 0.317154 |
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Target: 5'- gAGGCCGccguGGCcGCCGUGCGCGCCGu -3' miRNA: 3'- gUCCGGCu---UUGcCGGUACGUGUGGUc -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 20411 | 0.77 | 0.309937 |
|
Target: 5'- gGGGCCcgGGGACGGCCAacggGCGCGCgGGg -3' miRNA: 3'- gUCCGG--CUUUGCCGGUa---CGUGUGgUC- -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 23212 | 0.77 | 0.295881 |
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Target: 5'- -uGGCgGcgGCGGCCA-GCGCACCGGa -3' miRNA: 3'- guCCGgCuuUGCCGGUaCGUGUGGUC- -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 51790 | 0.81 | 0.181768 |
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Target: 5'- gGGGCCGugGCGGCCAaGUACGCCGc -3' miRNA: 3'- gUCCGGCuuUGCCGGUaCGUGUGGUc -5' |
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| 5956 | 3' | -56.4 | NC_001806.1 | + | 40863 | 0.81 | 0.181768 |
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Target: 5'- gGGGCgGGGACGGgCAUGCACACCc- -3' miRNA: 3'- gUCCGgCUUUGCCgGUACGUGUGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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