Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 88673 | 0.74 | 0.46786 |
Target: 5'- aGGGCC---GCGGCCAUGCGCuCgCAGa -3' miRNA: 3'- gUCCGGcuuUGCCGGUACGUGuG-GUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 10727 | 0.74 | 0.458528 |
Target: 5'- gCGGGaCCGGAGC-GCgCAUGCACGCCGc -3' miRNA: 3'- -GUCC-GGCUUUGcCG-GUACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 63131 | 0.74 | 0.431147 |
Target: 5'- gCAGGCCGuguGCaGGCCcUGCAUGCCGa -3' miRNA: 3'- -GUCCGGCuu-UG-CCGGuACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 3819 | 0.73 | 0.496421 |
Target: 5'- cCAGGCCccagccGAAGCGGCCG-GC-CGCCAu -3' miRNA: 3'- -GUCCGG------CUUUGCCGGUaCGuGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 133236 | 0.73 | 0.496421 |
Target: 5'- gCGGGCCaucGAGACGGCCGUGgGaGCCGu -3' miRNA: 3'- -GUCCGG---CUUUGCCGGUACgUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 150981 | 0.73 | 0.496421 |
Target: 5'- gCGGGCCc--ACGaGCCGcgGCGCGCCAGg -3' miRNA: 3'- -GUCCGGcuuUGC-CGGUa-CGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 54651 | 0.73 | 0.486811 |
Target: 5'- uGGGCCGuAACGGCCGacuuaGC-CGCCGGu -3' miRNA: 3'- gUCCGGCuUUGCCGGUa----CGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 46142 | 0.73 | 0.486811 |
Target: 5'- uGGGuCCGGAGgGGCCGgacGCACACCc- -3' miRNA: 3'- gUCC-GGCUUUgCCGGUa--CGUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24673 | 0.73 | 0.525743 |
Target: 5'- gGGGCgCGAGGCGGU---GCGCGCCGGc -3' miRNA: 3'- gUCCG-GCUUUGCCGguaCGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 73992 | 0.72 | 0.555694 |
Target: 5'- -cGGCCGggGCGGCCccGCagggggcuccGCGCCc- -3' miRNA: 3'- guCCGGCuuUGCCGGuaCG----------UGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 3359 | 0.72 | 0.545649 |
Target: 5'- gCGGGCCGGGcccCGGCCAgccccgggacgGC-CGCCAGg -3' miRNA: 3'- -GUCCGGCUUu--GCCGGUa----------CGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 75212 | 0.72 | 0.575936 |
Target: 5'- -cGGUgGAuGCGGCCGUGCgggcGCACCGc -3' miRNA: 3'- guCCGgCUuUGCCGGUACG----UGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 118813 | 0.72 | 0.555694 |
Target: 5'- cCAGGUCGAAAUccagacucgGGCuCAUGC-CACCGGc -3' miRNA: 3'- -GUCCGGCUUUG---------CCG-GUACGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2926 | 0.71 | 0.627124 |
Target: 5'- gCGGGCCGccgccuccGGGCGGCCggGcCGgGCCGGg -3' miRNA: 3'- -GUCCGGC--------UUUGCCGGuaC-GUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 68276 | 0.71 | 0.637404 |
Target: 5'- -uGGCC---ACGGCCAagcUGCGCGCCGc -3' miRNA: 3'- guCCGGcuuUGCCGGU---ACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 43502 | 0.71 | 0.606584 |
Target: 5'- gGGGCCGugGCGGCCcaucaggacaagAUGCgGCGCCuGg -3' miRNA: 3'- gUCCGGCuuUGCCGG------------UACG-UGUGGuC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 30636 | 0.71 | 0.596339 |
Target: 5'- aGGGCCGGGggggcGCGGCCAgggUGgGC-CCGGg -3' miRNA: 3'- gUCCGGCUU-----UGCCGGU---ACgUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 6794 | 0.71 | 0.637404 |
Target: 5'- -cGGCCaGAACcGCCGUGCACGacCCGGa -3' miRNA: 3'- guCCGGcUUUGcCGGUACGUGU--GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 125893 | 0.71 | 0.596339 |
Target: 5'- gGGGUuuuaCGAGGCGGCCAcGCAaaACCAGg -3' miRNA: 3'- gUCCG----GCUUUGCCGGUaCGUg-UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 11930 | 0.71 | 0.586121 |
Target: 5'- aUAGGCCGA----GCCGuUGUACGCCAGa -3' miRNA: 3'- -GUCCGGCUuugcCGGU-ACGUGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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