Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 11930 | 0.71 | 0.586121 |
Target: 5'- aUAGGCCGA----GCCGuUGUACGCCAGa -3' miRNA: 3'- -GUCCGGCUuugcCGGU-ACGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 125893 | 0.71 | 0.596339 |
Target: 5'- gGGGUuuuaCGAGGCGGCCAcGCAaaACCAGg -3' miRNA: 3'- gUCCG----GCUUUGCCGGUaCGUg-UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 81344 | 0.7 | 0.668185 |
Target: 5'- gCGGGCCGcaaccAGGCGGCCGggGCGuCGCCc- -3' miRNA: 3'- -GUCCGGC-----UUUGCCGGUa-CGU-GUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 91163 | 0.7 | 0.698699 |
Target: 5'- aGGGCCaGGAcACGGCCGcgGCccGCGCCAa -3' miRNA: 3'- gUCCGG-CUU-UGCCGGUa-CG--UGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 26997 | 0.7 | 0.698699 |
Target: 5'- gCGGGCCGAccgGGCUcgGUuccgGCGCCGGg -3' miRNA: 3'- -GUCCGGCUuugCCGGuaCG----UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 36206 | 0.7 | 0.678398 |
Target: 5'- --uGCCGcgcGGGCGGCCAUGC-CGCUGGa -3' miRNA: 3'- gucCGGC---UUUGCCGGUACGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 128311 | 0.7 | 0.678398 |
Target: 5'- uGGGUCGggGCcagcuccaucaGGCCGUGCACcugACgCAGa -3' miRNA: 3'- gUCCGGCuuUG-----------CCGGUACGUG---UG-GUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 106757 | 0.7 | 0.668185 |
Target: 5'- gCGGGCCGAcAACGGCUccGCGCuggacGCCu- -3' miRNA: 3'- -GUCCGGCU-UUGCCGGuaCGUG-----UGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 84239 | 0.7 | 0.668185 |
Target: 5'- -cGuGCUGAAacACGGCCGggggcgcggGCGCACCGGc -3' miRNA: 3'- guC-CGGCUU--UGCCGGUa--------CGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 71692 | 0.7 | 0.668185 |
Target: 5'- aCAGGCCGGGucucUGGCCAgcaggGCACAUa-- -3' miRNA: 3'- -GUCCGGCUUu---GCCGGUa----CGUGUGguc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 27796 | 0.7 | 0.64768 |
Target: 5'- gGGGCCG----GGCCGUGCAUGCUAa -3' miRNA: 3'- gUCCGGCuuugCCGGUACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 66822 | 0.7 | 0.657943 |
Target: 5'- gGGGCCGgcccGggUGGCCGgUGUGCGCCGc -3' miRNA: 3'- gUCCGGC----UuuGCCGGU-ACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 1560 | 0.7 | 0.657943 |
Target: 5'- cCGGGCCGGGcCGGC---GCGCACCGc -3' miRNA: 3'- -GUCCGGCUUuGCCGguaCGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 1606 | 0.7 | 0.657943 |
Target: 5'- aCGGGCCGcAGCGGC---GCGC-CCAGg -3' miRNA: 3'- -GUCCGGCuUUGCCGguaCGUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 79531 | 0.7 | 0.64768 |
Target: 5'- -cGGCCGAAagcacGCGGCCG-GCGC-CCGu -3' miRNA: 3'- guCCGGCUU-----UGCCGGUaCGUGuGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 109242 | 0.69 | 0.728706 |
Target: 5'- gCGGGgCGGAAUccugGGCCccGgGCACCAGg -3' miRNA: 3'- -GUCCgGCUUUG----CCGGuaCgUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 1714 | 0.69 | 0.738552 |
Target: 5'- gAGGCCGccgccCGGCCGUccaGCGCCGGc -3' miRNA: 3'- gUCCGGCuuu--GCCGGUAcg-UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 50098 | 0.69 | 0.728706 |
Target: 5'- gGGGCC---GCGGCCGUGCcguuacugaGCGCgGGg -3' miRNA: 3'- gUCCGGcuuUGCCGGUACG---------UGUGgUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2783 | 0.69 | 0.728706 |
Target: 5'- --cGCCGcgGCGGCCcgGgGCGCCGc -3' miRNA: 3'- gucCGGCuuUGCCGGuaCgUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23468 | 0.69 | 0.732655 |
Target: 5'- cCGGGCCGccgcggcgcAGGCccgcccgcgccccguGGCCGUGuCGCGCCGGc -3' miRNA: 3'- -GUCCGGC---------UUUG---------------CCGGUAC-GUGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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