miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 50098 0.69 0.728706
Target:  5'- gGGGCC---GCGGCCGUGCcguuacugaGCGCgGGg -3'
miRNA:   3'- gUCCGGcuuUGCCGGUACG---------UGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 151448 0.69 0.70877
Target:  5'- gGGGCggcggCGggGCGGCCGcggGCGCGCUc- -3'
miRNA:   3'- gUCCG-----GCuuUGCCGGUa--CGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 151289 0.69 0.70877
Target:  5'- gGGGCCGGggggcggcggcgGugGGCCggGCcucugGCGCCGGc -3'
miRNA:   3'- gUCCGGCU------------UugCCGGuaCG-----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 151544 0.69 0.70877
Target:  5'- uGGGCCcGGGCGGCCggGgGCGgCGGg -3'
miRNA:   3'- gUCCGGcUUUGCCGGuaCgUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 145013 0.69 0.728706
Target:  5'- gGGGCCccacAACGGCCcgGCGCAUg-- -3'
miRNA:   3'- gUCCGGcu--UUGCCGGuaCGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 1714 0.69 0.738552
Target:  5'- gAGGCCGccgccCGGCCGUccaGCGCCGGc -3'
miRNA:   3'- gUCCGGCuuu--GCCGGUAcg-UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 29446 0.69 0.718776
Target:  5'- gAGGCCGAGGaGGCCGUcagggcggGCACGgCCGu -3'
miRNA:   3'- gUCCGGCUUUgCCGGUA--------CGUGU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 34290 0.69 0.738552
Target:  5'- gGGGCgGGAugggguuuaGCGGCgGggggcgGCGCGCCGGa -3'
miRNA:   3'- gUCCGgCUU---------UGCCGgUa-----CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 38513 0.69 0.738552
Target:  5'- gGGGCUGGGgugucggauAUGGCCucugguggugGCGCACCGGu -3'
miRNA:   3'- gUCCGGCUU---------UGCCGGua--------CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 93494 0.69 0.748305
Target:  5'- gAGGCCGAGGCccuagucaGCCAacucgGCaACGCCGGg -3'
miRNA:   3'- gUCCGGCUUUGc-------CGGUa----CG-UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 23468 0.69 0.732655
Target:  5'- cCGGGCCGccgcggcgcAGGCccgcccgcgccccguGGCCGUGuCGCGCCGGc -3'
miRNA:   3'- -GUCCGGC---------UUUG---------------CCGGUAC-GUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 94901 0.68 0.757955
Target:  5'- uCAGGCCaccacgccCGGCC-UGUACGCCAu -3'
miRNA:   3'- -GUCCGGcuuu----GCCGGuACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 151569 0.68 0.804336
Target:  5'- gGGGCCGcgauGGCGGCgGcgGCGgGCCAu -3'
miRNA:   3'- gUCCGGCu---UUGCCGgUa-CGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 150864 0.68 0.804336
Target:  5'- --cGCCGGGcCGGCUccGCGgGCCAGg -3'
miRNA:   3'- gucCGGCUUuGCCGGuaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 133469 0.68 0.804336
Target:  5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3'
miRNA:   3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 23806 0.68 0.79534
Target:  5'- gGGGCCGccucuuUGGCCcccUGCGCGCCu- -3'
miRNA:   3'- gUCCGGCuuu---GCCGGu--ACGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 105134 0.68 0.79534
Target:  5'- aCAGcuuuCgGggGCGGCCGUGcCGCcCCAGg -3'
miRNA:   3'- -GUCc---GgCuuUGCCGGUAC-GUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 151691 0.68 0.804336
Target:  5'- -cGGCCGggGgGGCCcgggcUGCcCGCCGc -3'
miRNA:   3'- guCCGGCuuUgCCGGu----ACGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 92920 0.68 0.804336
Target:  5'- gCAGGgCGggGCgGGCC-UGgAgGCCGGg -3'
miRNA:   3'- -GUCCgGCuuUG-CCGGuACgUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 67793 0.68 0.804336
Target:  5'- -uGGCCGAc-UGGCCcgGCGCGuCCGu -3'
miRNA:   3'- guCCGGCUuuGCCGGuaCGUGU-GGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.