miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 133469 0.68 0.804336
Target:  5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3'
miRNA:   3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 150864 0.68 0.804336
Target:  5'- --cGCCGGGcCGGCUccGCGgGCCAGg -3'
miRNA:   3'- gucCGGCUUuGCCGGuaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 20187 0.68 0.79534
Target:  5'- gGGGCCGgcGCGGaguCggGCACggcGCCAGu -3'
miRNA:   3'- gUCCGGCuuUGCCg--GuaCGUG---UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 54722 0.68 0.786194
Target:  5'- gGGGaCGcAGCcGGCCGUGCAgACCAc -3'
miRNA:   3'- gUCCgGCuUUG-CCGGUACGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 34411 0.68 0.786194
Target:  5'- cCGGGCCGGGcCgGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGCUUuG-CCGGuaC-GUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4137 0.68 0.776909
Target:  5'- gAGGCCcGGGCGGCUGU-CGC-CCAGg -3'
miRNA:   3'- gUCCGGcUUUGCCGGUAcGUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 2742 0.68 0.776909
Target:  5'- gCGGGCCGGcgcgacACGGCCAcgGgGCGCgGGc -3'
miRNA:   3'- -GUCCGGCUu-----UGCCGGUa-CgUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 101977 0.68 0.767493
Target:  5'- --cGCCGGGuCGGCCcgGUACAgCGGa -3'
miRNA:   3'- gucCGGCUUuGCCGGuaCGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 127896 0.68 0.764643
Target:  5'- aUAGGCgCGGGugcagcggagcACGGCCAUGCcgagggcaaaggcgGCgACCAGg -3'
miRNA:   3'- -GUCCG-GCUU-----------UGCCGGUACG--------------UG-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 56849 0.68 0.757955
Target:  5'- -cGGCCaGGGCGGCCGcgGCGggcccaccgaucCACCAGa -3'
miRNA:   3'- guCCGGcUUUGCCGGUa-CGU------------GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 88979 0.68 0.776909
Target:  5'- aCAGGCgCGAGcgccGCGGCCAgaaGC-CGCCc- -3'
miRNA:   3'- -GUCCG-GCUU----UGCCGGUa--CGuGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 10699 0.68 0.757955
Target:  5'- gGGGCCGggGgGGC---GUACGCCAu -3'
miRNA:   3'- gUCCGGCuuUgCCGguaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 94901 0.68 0.757955
Target:  5'- uCAGGCCaccacgccCGGCC-UGUACGCCAu -3'
miRNA:   3'- -GUCCGGcuuu----GCCGGuACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 108923 0.68 0.785271
Target:  5'- uCGGGCCGAGggacguACaGGCCGUgGCGCuguguguACCGGc -3'
miRNA:   3'- -GUCCGGCUU------UG-CCGGUA-CGUG-------UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 51393 0.68 0.786194
Target:  5'- gGGGCUccuuagcGCGGCCGUGgGCGCCu- -3'
miRNA:   3'- gUCCGGcuu----UGCCGGUACgUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 55024 0.68 0.786194
Target:  5'- gUAGGC---GGCGGCCGUGCACgucGCCu- -3'
miRNA:   3'- -GUCCGgcuUUGCCGGUACGUG---UGGuc -5'
5956 3' -56.4 NC_001806.1 + 22176 0.67 0.83035
Target:  5'- gGGcGCCccGGCGGCCGUGUggGCGCCc- -3'
miRNA:   3'- gUC-CGGcuUUGCCGGUACG--UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 146195 0.67 0.813176
Target:  5'- cCGGGCC---GCGGCUcUGUgguuaACACCAGa -3'
miRNA:   3'- -GUCCGGcuuUGCCGGuACG-----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 27261 0.67 0.813176
Target:  5'- gGGGgCGGGACuGGCCAaucgGCGgcCGCCAGc -3'
miRNA:   3'- gUCCgGCUUUG-CCGGUa---CGU--GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3183 0.67 0.813176
Target:  5'- -cGGCCacGGCGGCCucgcUGC-CGCCGGc -3'
miRNA:   3'- guCCGGcuUUGCCGGu---ACGuGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.