miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 68276 0.71 0.637404
Target:  5'- -uGGCC---ACGGCCAagcUGCGCGCCGc -3'
miRNA:   3'- guCCGGcuuUGCCGGU---ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 6794 0.71 0.637404
Target:  5'- -cGGCCaGAACcGCCGUGCACGacCCGGa -3'
miRNA:   3'- guCCGGcUUUGcCGGUACGUGU--GGUC- -5'
5956 3' -56.4 NC_001806.1 + 27796 0.7 0.64768
Target:  5'- gGGGCCG----GGCCGUGCAUGCUAa -3'
miRNA:   3'- gUCCGGCuuugCCGGUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 79531 0.7 0.64768
Target:  5'- -cGGCCGAAagcacGCGGCCG-GCGC-CCGu -3'
miRNA:   3'- guCCGGCUU-----UGCCGGUaCGUGuGGUc -5'
5956 3' -56.4 NC_001806.1 + 1606 0.7 0.657943
Target:  5'- aCGGGCCGcAGCGGC---GCGC-CCAGg -3'
miRNA:   3'- -GUCCGGCuUUGCCGguaCGUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1560 0.7 0.657943
Target:  5'- cCGGGCCGGGcCGGC---GCGCACCGc -3'
miRNA:   3'- -GUCCGGCUUuGCCGguaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 66822 0.7 0.657943
Target:  5'- gGGGCCGgcccGggUGGCCGgUGUGCGCCGc -3'
miRNA:   3'- gUCCGGC----UuuGCCGGU-ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 71692 0.7 0.668185
Target:  5'- aCAGGCCGGGucucUGGCCAgcaggGCACAUa-- -3'
miRNA:   3'- -GUCCGGCUUu---GCCGGUa----CGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 81344 0.7 0.668185
Target:  5'- gCGGGCCGcaaccAGGCGGCCGggGCGuCGCCc- -3'
miRNA:   3'- -GUCCGGC-----UUUGCCGGUa-CGU-GUGGuc -5'
5956 3' -56.4 NC_001806.1 + 84239 0.7 0.668185
Target:  5'- -cGuGCUGAAacACGGCCGggggcgcggGCGCACCGGc -3'
miRNA:   3'- guC-CGGCUU--UGCCGGUa--------CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 106757 0.7 0.668185
Target:  5'- gCGGGCCGAcAACGGCUccGCGCuggacGCCu- -3'
miRNA:   3'- -GUCCGGCU-UUGCCGGuaCGUG-----UGGuc -5'
5956 3' -56.4 NC_001806.1 + 36206 0.7 0.678398
Target:  5'- --uGCCGcgcGGGCGGCCAUGC-CGCUGGa -3'
miRNA:   3'- gucCGGC---UUUGCCGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 128311 0.7 0.678398
Target:  5'- uGGGUCGggGCcagcuccaucaGGCCGUGCACcugACgCAGa -3'
miRNA:   3'- gUCCGGCuuUG-----------CCGGUACGUG---UG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 26997 0.7 0.698699
Target:  5'- gCGGGCCGAccgGGCUcgGUuccgGCGCCGGg -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCG----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 91163 0.7 0.698699
Target:  5'- aGGGCCaGGAcACGGCCGcgGCccGCGCCAa -3'
miRNA:   3'- gUCCGG-CUU-UGCCGGUa-CG--UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 151544 0.69 0.70877
Target:  5'- uGGGCCcGGGCGGCCggGgGCGgCGGg -3'
miRNA:   3'- gUCCGGcUUUGCCGGuaCgUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 151289 0.69 0.70877
Target:  5'- gGGGCCGGggggcggcggcgGugGGCCggGCcucugGCGCCGGc -3'
miRNA:   3'- gUCCGGCU------------UugCCGGuaCG-----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 151448 0.69 0.70877
Target:  5'- gGGGCggcggCGggGCGGCCGcggGCGCGCUc- -3'
miRNA:   3'- gUCCG-----GCuuUGCCGGUa--CGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 29446 0.69 0.718776
Target:  5'- gAGGCCGAGGaGGCCGUcagggcggGCACGgCCGu -3'
miRNA:   3'- gUCCGGCUUUgCCGGUA--------CGUGU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 24012 0.69 0.718776
Target:  5'- -uGGCC-AAcCGGCUGUGCGgGCCGGa -3'
miRNA:   3'- guCCGGcUUuGCCGGUACGUgUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.