Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 2742 | 0.68 | 0.776909 |
Target: 5'- gCGGGCCGGcgcgacACGGCCAcgGgGCGCgGGc -3' miRNA: 3'- -GUCCGGCUu-----UGCCGGUa-CgUGUGgUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 108923 | 0.68 | 0.785271 |
Target: 5'- uCGGGCCGAGggacguACaGGCCGUgGCGCuguguguACCGGc -3' miRNA: 3'- -GUCCGGCUU------UG-CCGGUA-CGUG-------UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 54722 | 0.68 | 0.786194 |
Target: 5'- gGGGaCGcAGCcGGCCGUGCAgACCAc -3' miRNA: 3'- gUCCgGCuUUG-CCGGUACGUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 51393 | 0.68 | 0.786194 |
Target: 5'- gGGGCUccuuagcGCGGCCGUGgGCGCCu- -3' miRNA: 3'- gUCCGGcuu----UGCCGGUACgUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 55024 | 0.68 | 0.786194 |
Target: 5'- gUAGGC---GGCGGCCGUGCACgucGCCu- -3' miRNA: 3'- -GUCCGgcuUUGCCGGUACGUG---UGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 34411 | 0.68 | 0.786194 |
Target: 5'- cCGGGCCGGGcCgGGCCggGcCGgGCCGGg -3' miRNA: 3'- -GUCCGGCUUuG-CCGGuaC-GUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23806 | 0.68 | 0.79534 |
Target: 5'- gGGGCCGccucuuUGGCCcccUGCGCGCCu- -3' miRNA: 3'- gUCCGGCuuu---GCCGGu--ACGUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 20187 | 0.68 | 0.79534 |
Target: 5'- gGGGCCGgcGCGGaguCggGCACggcGCCAGu -3' miRNA: 3'- gUCCGGCuuUGCCg--GuaCGUG---UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 105134 | 0.68 | 0.79534 |
Target: 5'- aCAGcuuuCgGggGCGGCCGUGcCGCcCCAGg -3' miRNA: 3'- -GUCc---GgCuuUGCCGGUAC-GUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 76486 | 0.68 | 0.803444 |
Target: 5'- -uGGCCGAuaccaagGACGccGUgGUGCGCGCCAa -3' miRNA: 3'- guCCGGCU-------UUGC--CGgUACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 67793 | 0.68 | 0.804336 |
Target: 5'- -uGGCCGAc-UGGCCcgGCGCGuCCGu -3' miRNA: 3'- guCCGGCUuuGCCGGuaCGUGU-GGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 150864 | 0.68 | 0.804336 |
Target: 5'- --cGCCGGGcCGGCUccGCGgGCCAGg -3' miRNA: 3'- gucCGGCUUuGCCGGuaCGUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 92920 | 0.68 | 0.804336 |
Target: 5'- gCAGGgCGggGCgGGCC-UGgAgGCCGGg -3' miRNA: 3'- -GUCCgGCuuUG-CCGGuACgUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 133469 | 0.68 | 0.804336 |
Target: 5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3' miRNA: 3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151691 | 0.68 | 0.804336 |
Target: 5'- -cGGCCGggGgGGCCcgggcUGCcCGCCGc -3' miRNA: 3'- guCCGGCuuUgCCGGu----ACGuGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 151569 | 0.68 | 0.804336 |
Target: 5'- gGGGCCGcgauGGCGGCgGcgGCGgGCCAu -3' miRNA: 3'- gUCCGGCu---UUGCCGgUa-CGUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 27261 | 0.67 | 0.813176 |
Target: 5'- gGGGgCGGGACuGGCCAaucgGCGgcCGCCAGc -3' miRNA: 3'- gUCCgGCUUUG-CCGGUa---CGU--GUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 146195 | 0.67 | 0.813176 |
Target: 5'- cCGGGCC---GCGGCUcUGUgguuaACACCAGa -3' miRNA: 3'- -GUCCGGcuuUGCCGGuACG-----UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 131590 | 0.67 | 0.813176 |
Target: 5'- cCGGGCC----CGGCCAgGCACGgCAGc -3' miRNA: 3'- -GUCCGGcuuuGCCGGUaCGUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 3183 | 0.67 | 0.813176 |
Target: 5'- -cGGCCacGGCGGCCucgcUGC-CGCCGGc -3' miRNA: 3'- guCCGGcuUUGCCGGu---ACGuGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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