miRNA display CGI


Results 121 - 140 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 145728 0.66 0.862457
Target:  5'- -uGGCCGcgcgggugcGCGuGCCuuUGCACACCAa -3'
miRNA:   3'- guCCGGCuu-------UGC-CGGu-ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 4743 0.66 0.862457
Target:  5'- cCGGGCCGG---GGCCcgGU-CGCCGGc -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75520 0.66 0.862457
Target:  5'- gCGGGCCacGAGggcagguucgGgGGCCuguUGCACGCCGa -3'
miRNA:   3'- -GUCCGG--CUU----------UgCCGGu--ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 4666 0.66 0.867742
Target:  5'- uGGGCCGGcgggcgcggcgacaGGCGGuCCGUGgGguCCGGa -3'
miRNA:   3'- gUCCGGCU--------------UUGCC-GGUACgUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 2402 0.66 0.869976
Target:  5'- cCAGGCCGccauGCGGCgCA-GCGgGCCc- -3'
miRNA:   3'- -GUCCGGCuu--UGCCG-GUaCGUgUGGuc -5'
5956 3' -56.4 NC_001806.1 + 13605 0.66 0.869976
Target:  5'- gGGGCUGGAACgGGUCcgGUAgGCCc- -3'
miRNA:   3'- gUCCGGCUUUG-CCGGuaCGUgUGGuc -5'
5956 3' -56.4 NC_001806.1 + 38604 0.66 0.869976
Target:  5'- -uGGuuGGAacACGGC--UGCACACCAc -3'
miRNA:   3'- guCCggCUU--UGCCGguACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 2221 0.66 0.869976
Target:  5'- -cGGCCGugucCGGCCc-GCACAgCCGGu -3'
miRNA:   3'- guCCGGCuuu-GCCGGuaCGUGU-GGUC- -5'
5956 3' -56.4 NC_001806.1 + 121674 0.66 0.869976
Target:  5'- uGGGCCaAGAUGGCCcaGUGUACccuggcgguCCAGg -3'
miRNA:   3'- gUCCGGcUUUGCCGG--UACGUGu--------GGUC- -5'
5956 3' -56.4 NC_001806.1 + 77375 0.66 0.869976
Target:  5'- aCAGGCC-AGACGGgCGcggGCGCGgCGGc -3'
miRNA:   3'- -GUCCGGcUUUGCCgGUa--CGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 61953 0.66 0.869976
Target:  5'- aCAGGCCGGAGaGGCCGcccagGUuuuccguaACCAGg -3'
miRNA:   3'- -GUCCGGCUUUgCCGGUa----CGug------UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4822 0.66 0.869976
Target:  5'- gGGGuCCGggGCGGCgAgGC-CGCgGGg -3'
miRNA:   3'- gUCC-GGCuuUGCCGgUaCGuGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 64134 0.66 0.869976
Target:  5'- cCAGGgCGAugUGGCgCAUGcCGCGCguGg -3'
miRNA:   3'- -GUCCgGCUuuGCCG-GUAC-GUGUGguC- -5'
5956 3' -56.4 NC_001806.1 + 82864 0.66 0.877279
Target:  5'- gGGGUcauauccuCGAaccaGACGGCCGcgucaUGCGCGCCGu -3'
miRNA:   3'- gUCCG--------GCU----UUGCCGGU-----ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 49371 0.66 0.877279
Target:  5'- cCGGGcCCGAuGCGGCCcguagccagucgGUGCGCggucGCCuGg -3'
miRNA:   3'- -GUCC-GGCUuUGCCGG------------UACGUG----UGGuC- -5'
5956 3' -56.4 NC_001806.1 + 34533 0.66 0.880139
Target:  5'- gCGGGCCGGGccgcucguaagagccGCGaCCcgGC-CGCCGGg -3'
miRNA:   3'- -GUCCGGCUU---------------UGCcGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 132188 0.66 0.884362
Target:  5'- uGGGCgCGccuGGCGGCCAUucGCgACACCc- -3'
miRNA:   3'- gUCCG-GCu--UUGCCGGUA--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 57048 0.66 0.884362
Target:  5'- gGGGCCGggGCccccGGC--UGCGUGCCGGg -3'
miRNA:   3'- gUCCGGCuuUG----CCGguACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 78785 0.66 0.884362
Target:  5'- gCGGGCCGGAcGCcGCCuUGCGCgauGCCGu -3'
miRNA:   3'- -GUCCGGCUU-UGcCGGuACGUG---UGGUc -5'
5956 3' -56.4 NC_001806.1 + 91007 0.66 0.884362
Target:  5'- gCGGGCgCGAcggcGGCGGCaaggGCGCGgCGGg -3'
miRNA:   3'- -GUCCG-GCU----UUGCCGgua-CGUGUgGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.