Results 61 - 80 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 76486 | 0.68 | 0.803444 |
Target: 5'- -uGGCCGAuaccaagGACGccGUgGUGCGCGCCAa -3' miRNA: 3'- guCCGGCU-------UUGC--CGgUACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 20187 | 0.68 | 0.79534 |
Target: 5'- gGGGCCGgcGCGGaguCggGCACggcGCCAGu -3' miRNA: 3'- gUCCGGCuuUGCCg--GuaCGUG---UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23806 | 0.68 | 0.79534 |
Target: 5'- gGGGCCGccucuuUGGCCcccUGCGCGCCu- -3' miRNA: 3'- gUCCGGCuuu---GCCGGu--ACGUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 105134 | 0.68 | 0.79534 |
Target: 5'- aCAGcuuuCgGggGCGGCCGUGcCGCcCCAGg -3' miRNA: 3'- -GUCc---GgCuuUGCCGGUAC-GUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 54722 | 0.68 | 0.786194 |
Target: 5'- gGGGaCGcAGCcGGCCGUGCAgACCAc -3' miRNA: 3'- gUCCgGCuUUG-CCGGUACGUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 34411 | 0.68 | 0.786194 |
Target: 5'- cCGGGCCGGGcCgGGCCggGcCGgGCCGGg -3' miRNA: 3'- -GUCCGGCUUuG-CCGGuaC-GUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 55024 | 0.68 | 0.786194 |
Target: 5'- gUAGGC---GGCGGCCGUGCACgucGCCu- -3' miRNA: 3'- -GUCCGgcuUUGCCGGUACGUG---UGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 51393 | 0.68 | 0.786194 |
Target: 5'- gGGGCUccuuagcGCGGCCGUGgGCGCCu- -3' miRNA: 3'- gUCCGGcuu----UGCCGGUACgUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 108923 | 0.68 | 0.785271 |
Target: 5'- uCGGGCCGAGggacguACaGGCCGUgGCGCuguguguACCGGc -3' miRNA: 3'- -GUCCGGCUU------UG-CCGGUA-CGUG-------UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2742 | 0.68 | 0.776909 |
Target: 5'- gCGGGCCGGcgcgacACGGCCAcgGgGCGCgGGc -3' miRNA: 3'- -GUCCGGCUu-----UGCCGGUa-CgUGUGgUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 4137 | 0.68 | 0.776909 |
Target: 5'- gAGGCCcGGGCGGCUGU-CGC-CCAGg -3' miRNA: 3'- gUCCGGcUUUGCCGGUAcGUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 21622 | 0.68 | 0.776909 |
Target: 5'- -cGGCCGGuGGCGGCCAUcgGCGuCAUCGa -3' miRNA: 3'- guCCGGCU-UUGCCGGUA--CGU-GUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 88979 | 0.68 | 0.776909 |
Target: 5'- aCAGGCgCGAGcgccGCGGCCAgaaGC-CGCCc- -3' miRNA: 3'- -GUCCG-GCUU----UGCCGGUa--CGuGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 101977 | 0.68 | 0.767493 |
Target: 5'- --cGCCGGGuCGGCCcgGUACAgCGGa -3' miRNA: 3'- gucCGGCUUuGCCGGuaCGUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 127896 | 0.68 | 0.764643 |
Target: 5'- aUAGGCgCGGGugcagcggagcACGGCCAUGCcgagggcaaaggcgGCgACCAGg -3' miRNA: 3'- -GUCCG-GCUU-----------UGCCGGUACG--------------UG-UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 94901 | 0.68 | 0.757955 |
Target: 5'- uCAGGCCaccacgccCGGCC-UGUACGCCAu -3' miRNA: 3'- -GUCCGGcuuu----GCCGGuACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 10699 | 0.68 | 0.757955 |
Target: 5'- gGGGCCGggGgGGC---GUACGCCAu -3' miRNA: 3'- gUCCGGCuuUgCCGguaCGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 22884 | 0.68 | 0.757955 |
Target: 5'- gGGGCUGGccGgGGCCcgGCcCGCCAGc -3' miRNA: 3'- gUCCGGCUu-UgCCGGuaCGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 56849 | 0.68 | 0.757955 |
Target: 5'- -cGGCCaGGGCGGCCGcgGCGggcccaccgaucCACCAGa -3' miRNA: 3'- guCCGGcUUUGCCGGUa-CGU------------GUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 99772 | 0.69 | 0.748305 |
Target: 5'- aGGGCCGGGugGGUCGuUGUugGuuCCGGu -3' miRNA: 3'- gUCCGGCUUugCCGGU-ACGugU--GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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