miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 24848 0.71 0.616849
Target:  5'- aCGGGCCGcAGCGGCacCGUGCugGCg-- -3'
miRNA:   3'- -GUCCGGCuUUGCCG--GUACGugUGguc -5'
5956 3' -56.4 NC_001806.1 + 26997 0.7 0.698699
Target:  5'- gCGGGCCGAccgGGCUcgGUuccgGCGCCGGg -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCG----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 27034 0.75 0.37939
Target:  5'- gAGGCCGAGGCGGUCAU-CGgGCCGu -3'
miRNA:   3'- gUCCGGCUUUGCCGGUAcGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 27261 0.67 0.813176
Target:  5'- gGGGgCGGGACuGGCCAaucgGCGgcCGCCAGc -3'
miRNA:   3'- gUCCgGCUUUG-CCGGUa---CGU--GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 27796 0.7 0.64768
Target:  5'- gGGGCCG----GGCCGUGCAUGCUAa -3'
miRNA:   3'- gUCCGGCuuugCCGGUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 28185 0.67 0.846796
Target:  5'- gGGGCCG-GGC-GCCAUGUcugggGCGCCAu -3'
miRNA:   3'- gUCCGGCuUUGcCGGUACG-----UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 29446 0.69 0.718776
Target:  5'- gAGGCCGAGGaGGCCGUcagggcggGCACGgCCGu -3'
miRNA:   3'- gUCCGGCUUUgCCGGUA--------CGUGU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 30292 0.66 0.893899
Target:  5'- gGGGCgGAGcCGGCCGcccgccccgcggacGCGCGCCGu -3'
miRNA:   3'- gUCCGgCUUuGCCGGUa-------------CGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 30636 0.71 0.596339
Target:  5'- aGGGCCGGGggggcGCGGCCAgggUGgGC-CCGGg -3'
miRNA:   3'- gUCCGGCUU-----UGCCGGU---ACgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 30916 0.67 0.853944
Target:  5'- gGGGCCGuccccgcGGGCGGCCuacGCGCuACCu- -3'
miRNA:   3'- gUCCGGC-------UUUGCCGGua-CGUG-UGGuc -5'
5956 3' -56.4 NC_001806.1 + 34290 0.69 0.738552
Target:  5'- gGGGCgGGAugggguuuaGCGGCgGggggcgGCGCGCCGGa -3'
miRNA:   3'- gUCCGgCUU---------UGCCGgUa-----CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 34411 0.68 0.786194
Target:  5'- cCGGGCCGGGcCgGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGCUUuG-CCGGuaC-GUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 34533 0.66 0.880139
Target:  5'- gCGGGCCGGGccgcucguaagagccGCGaCCcgGC-CGCCGGg -3'
miRNA:   3'- -GUCCGGCUU---------------UGCcGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 36206 0.7 0.678398
Target:  5'- --uGCCGcgcGGGCGGCCAUGC-CGCUGGa -3'
miRNA:   3'- gucCGGC---UUUGCCGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 36383 0.67 0.846796
Target:  5'- ---cCCGAcgcuaAACGGCCGcGCACACCGc -3'
miRNA:   3'- guccGGCU-----UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 38513 0.69 0.738552
Target:  5'- gGGGCUGGGgugucggauAUGGCCucugguggugGCGCACCGGu -3'
miRNA:   3'- gUCCGGCUU---------UGCCGGua--------CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 38604 0.66 0.869976
Target:  5'- -uGGuuGGAacACGGC--UGCACACCAc -3'
miRNA:   3'- guCCggCUU--UGCCGguACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 40863 0.81 0.181768
Target:  5'- gGGGCgGGGACGGgCAUGCACACCc- -3'
miRNA:   3'- gUCCGgCUUUGCCgGUACGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 43502 0.71 0.606584
Target:  5'- gGGGCCGugGCGGCCcaucaggacaagAUGCgGCGCCuGg -3'
miRNA:   3'- gUCCGGCuuUGCCGG------------UACG-UGUGGuC- -5'
5956 3' -56.4 NC_001806.1 + 46142 0.73 0.486811
Target:  5'- uGGGuCCGGAGgGGCCGgacGCACACCc- -3'
miRNA:   3'- gUCC-GGCUUUgCCGGUa--CGUGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.