miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 71692 0.7 0.668185
Target:  5'- aCAGGCCGGGucucUGGCCAgcaggGCACAUa-- -3'
miRNA:   3'- -GUCCGGCUUu---GCCGGUa----CGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 73454 0.76 0.355119
Target:  5'- cCAGGCCGGggUGGCCGgcccgGC-CGCCGc -3'
miRNA:   3'- -GUCCGGCUuuGCCGGUa----CGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 73940 0.76 0.355119
Target:  5'- gGGGUCGAcGCGGUCucacaGCACGCCGGg -3'
miRNA:   3'- gUCCGGCUuUGCCGGua---CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 73992 0.72 0.555694
Target:  5'- -cGGCCGggGCGGCCccGCagggggcuccGCGCCc- -3'
miRNA:   3'- guCCGGCuuUGCCGGuaCG----------UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 75212 0.72 0.575936
Target:  5'- -cGGUgGAuGCGGCCGUGCgggcGCACCGc -3'
miRNA:   3'- guCCGgCUuUGCCGGUACG----UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 75245 0.66 0.884362
Target:  5'- -uGGUCGAcgcgguGACGGCCcuggGCGCggccGCCAGc -3'
miRNA:   3'- guCCGGCU------UUGCCGGua--CGUG----UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75477 0.66 0.890544
Target:  5'- cCAGGCCGcGACGcGCgcgaccaCcgGCGCGCgGGa -3'
miRNA:   3'- -GUCCGGCuUUGC-CG-------GuaCGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 75520 0.66 0.862457
Target:  5'- gCGGGCCacGAGggcagguucgGgGGCCuguUGCACGCCGa -3'
miRNA:   3'- -GUCCGG--CUU----------UgCCGGu--ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 75718 0.66 0.89122
Target:  5'- uGGGCCGccGACguggaGGCCGUGCugGaCCGc -3'
miRNA:   3'- gUCCGGCu-UUG-----CCGGUACGugU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 75996 0.67 0.83035
Target:  5'- gGGGCC---GCGGCCGacacGUACGCCGa -3'
miRNA:   3'- gUCCGGcuuUGCCGGUa---CGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 76486 0.68 0.803444
Target:  5'- -uGGCCGAuaccaagGACGccGUgGUGCGCGCCAa -3'
miRNA:   3'- guCCGGCU-------UUGC--CGgUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 77375 0.66 0.869976
Target:  5'- aCAGGCC-AGACGGgCGcggGCGCGgCGGc -3'
miRNA:   3'- -GUCCGGcUUUGCCgGUa--CGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 78785 0.66 0.884362
Target:  5'- gCGGGCCGGAcGCcGCCuUGCGCgauGCCGu -3'
miRNA:   3'- -GUCCGGCUU-UGcCGGuACGUG---UGGUc -5'
5956 3' -56.4 NC_001806.1 + 79490 0.67 0.854728
Target:  5'- uGGGCCGGcagucACGGCUcgcgaaGCACgACCGGg -3'
miRNA:   3'- gUCCGGCUu----UGCCGGua----CGUG-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 79531 0.7 0.64768
Target:  5'- -cGGCCGAAagcacGCGGCCG-GCGC-CCGu -3'
miRNA:   3'- guCCGGCUU-----UGCCGGUaCGUGuGGUc -5'
5956 3' -56.4 NC_001806.1 + 81061 0.66 0.893899
Target:  5'- --cGCCGGgcgcugcuucaucacAGCGacGCCGUGCugACCAGc -3'
miRNA:   3'- gucCGGCU---------------UUGC--CGGUACGugUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 81344 0.7 0.668185
Target:  5'- gCGGGCCGcaaccAGGCGGCCGggGCGuCGCCc- -3'
miRNA:   3'- -GUCCGGC-----UUUGCCGGUa-CGU-GUGGuc -5'
5956 3' -56.4 NC_001806.1 + 82864 0.66 0.877279
Target:  5'- gGGGUcauauccuCGAaccaGACGGCCGcgucaUGCGCGCCGu -3'
miRNA:   3'- gUCCG--------GCU----UUGCCGGU-----ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 84239 0.7 0.668185
Target:  5'- -cGuGCUGAAacACGGCCGggggcgcggGCGCACCGGc -3'
miRNA:   3'- guC-CGGCUU--UGCCGGUa--------CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 88673 0.74 0.46786
Target:  5'- aGGGCC---GCGGCCAUGCGCuCgCAGa -3'
miRNA:   3'- gUCCGGcuuUGCCGGUACGUGuG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.