miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 88979 0.68 0.776909
Target:  5'- aCAGGCgCGAGcgccGCGGCCAgaaGC-CGCCc- -3'
miRNA:   3'- -GUCCG-GCUU----UGCCGGUa--CGuGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 89791 0.76 0.363087
Target:  5'- gGGGCUGggGCGGaCCG-GCACGCCc- -3'
miRNA:   3'- gUCCGGCuuUGCC-GGUaCGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 91007 0.66 0.884362
Target:  5'- gCGGGCgCGAcggcGGCGGCaaggGCGCGgCGGg -3'
miRNA:   3'- -GUCCG-GCU----UUGCCGgua-CGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 91163 0.7 0.698699
Target:  5'- aGGGCCaGGAcACGGCCGcgGCccGCGCCAa -3'
miRNA:   3'- gUCCGG-CUU-UGCCGGUa-CG--UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 92920 0.68 0.804336
Target:  5'- gCAGGgCGggGCgGGCC-UGgAgGCCGGg -3'
miRNA:   3'- -GUCCgGCuuUG-CCGGuACgUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 92981 0.67 0.854728
Target:  5'- cCGGGCgCGuGGACGuCCAUGUuCGCCAGc -3'
miRNA:   3'- -GUCCG-GC-UUUGCcGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 93290 0.71 0.627124
Target:  5'- gAGGgCGggGCGGCCGU---CGCCAGu -3'
miRNA:   3'- gUCCgGCuuUGCCGGUAcguGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 93494 0.69 0.748305
Target:  5'- gAGGCCGAGGCccuagucaGCCAacucgGCaACGCCGGg -3'
miRNA:   3'- gUCCGGCUUUGc-------CGGUa----CG-UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 94901 0.68 0.757955
Target:  5'- uCAGGCCaccacgccCGGCC-UGUACGCCAu -3'
miRNA:   3'- -GUCCGGcuuu----GCCGGuACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 99772 0.69 0.748305
Target:  5'- aGGGCCGGGugGGUCGuUGUugGuuCCGGu -3'
miRNA:   3'- gUCCGGCUUugCCGGU-ACGugU--GGUC- -5'
5956 3' -56.4 NC_001806.1 + 100774 0.66 0.862457
Target:  5'- -cGGCCucGGCGGCCAgucGCcGCGCCc- -3'
miRNA:   3'- guCCGGcuUUGCCGGUa--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 101977 0.68 0.767493
Target:  5'- --cGCCGGGuCGGCCcgGUACAgCGGa -3'
miRNA:   3'- gucCGGCUUuGCCGGuaCGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 102507 0.75 0.404747
Target:  5'- -cGGucCCGAucaccGCGGCCAgGCACGCCAGg -3'
miRNA:   3'- guCC--GGCUu----UGCCGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 105134 0.68 0.79534
Target:  5'- aCAGcuuuCgGggGCGGCCGUGcCGCcCCAGg -3'
miRNA:   3'- -GUCc---GgCuuUGCCGGUAC-GUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 106757 0.7 0.668185
Target:  5'- gCGGGCCGAcAACGGCUccGCGCuggacGCCu- -3'
miRNA:   3'- -GUCCGGCU-UUGCCGGuaCGUG-----UGGuc -5'
5956 3' -56.4 NC_001806.1 + 108923 0.68 0.785271
Target:  5'- uCGGGCCGAGggacguACaGGCCGUgGCGCuguguguACCGGc -3'
miRNA:   3'- -GUCCGGCUU------UG-CCGGUA-CGUG-------UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 109242 0.69 0.728706
Target:  5'- gCGGGgCGGAAUccugGGCCccGgGCACCAGg -3'
miRNA:   3'- -GUCCgGCUUUG----CCGGuaCgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 112852 0.66 0.884362
Target:  5'- -cGGUCauGGAACGguuuGCCGcGCACGCCGGg -3'
miRNA:   3'- guCCGG--CUUUGC----CGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 118813 0.72 0.555694
Target:  5'- cCAGGUCGAAAUccagacucgGGCuCAUGC-CACCGGc -3'
miRNA:   3'- -GUCCGGCUUUG---------CCG-GUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 121674 0.66 0.869976
Target:  5'- uGGGCCaAGAUGGCCcaGUGUACccuggcgguCCAGg -3'
miRNA:   3'- gUCCGGcUUUGCCGG--UACGUGu--------GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.