miRNA display CGI


Results 121 - 140 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 122885 0.67 0.854728
Target:  5'- -cGGCCGAgaagAGCGGCgaGUGCucGCAgCAGu -3'
miRNA:   3'- guCCGGCU----UUGCCGg-UACG--UGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 125893 0.71 0.596339
Target:  5'- gGGGUuuuaCGAGGCGGCCAcGCAaaACCAGg -3'
miRNA:   3'- gUCCG----GCUUUGCCGGUaCGUg-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 127896 0.68 0.764643
Target:  5'- aUAGGCgCGGGugcagcggagcACGGCCAUGCcgagggcaaaggcgGCgACCAGg -3'
miRNA:   3'- -GUCCG-GCUU-----------UGCCGGUACG--------------UG-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 128036 0.74 0.46786
Target:  5'- cCAGGCCGAcgaugcccguGGCGGCCAcgGCcC-CCAGg -3'
miRNA:   3'- -GUCCGGCU----------UUGCCGGUa-CGuGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 128311 0.7 0.678398
Target:  5'- uGGGUCGggGCcagcuccaucaGGCCGUGCACcugACgCAGa -3'
miRNA:   3'- gUCCGGCuuUG-----------CCGGUACGUG---UG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 128516 0.67 0.83035
Target:  5'- -uGGCgugCGgcAUGGCCAUGCGgGCCGc -3'
miRNA:   3'- guCCG---GCuuUGCCGGUACGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 129673 0.67 0.846796
Target:  5'- cCGGGCCGccGAGCGGCCcgucuccGgACGCCu- -3'
miRNA:   3'- -GUCCGGC--UUUGCCGGua-----CgUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 131590 0.67 0.813176
Target:  5'- cCGGGCC----CGGCCAgGCACGgCAGc -3'
miRNA:   3'- -GUCCGGcuuuGCCGGUaCGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 131866 0.75 0.387723
Target:  5'- cCAGGCCGucguGGCGGCCGccCGCGCCGc -3'
miRNA:   3'- -GUCCGGCu---UUGCCGGUacGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 132188 0.66 0.884362
Target:  5'- uGGGCgCGccuGGCGGCCAUucGCgACACCc- -3'
miRNA:   3'- gUCCG-GCu--UUGCCGGUA--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 132357 0.67 0.83035
Target:  5'- uGGGCCu--GCGGCCAcGCggGCACCc- -3'
miRNA:   3'- gUCCGGcuuUGCCGGUaCG--UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 133236 0.73 0.496421
Target:  5'- gCGGGCCaucGAGACGGCCGUGgGaGCCGu -3'
miRNA:   3'- -GUCCGG---CUUUGCCGGUACgUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 133469 0.68 0.804336
Target:  5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3'
miRNA:   3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 134299 0.66 0.890544
Target:  5'- aGGGCCGAGagaacggGgGGCgGguUGUugGCCAGc -3'
miRNA:   3'- gUCCGGCUU-------UgCCGgU--ACGugUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 135974 0.66 0.89122
Target:  5'- gAGGCgCGAGGCGGCCG---AC-CCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGGUacgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 136534 0.67 0.854728
Target:  5'- aCGGGCCGcucGGGCcGCCcgGCGCAaagCAGg -3'
miRNA:   3'- -GUCCGGC---UUUGcCGGuaCGUGUg--GUC- -5'
5956 3' -56.4 NC_001806.1 + 141418 0.74 0.440169
Target:  5'- cCAGGCCGggGCGGC---GCGCgGCCAa -3'
miRNA:   3'- -GUCCGGCuuUGCCGguaCGUG-UGGUc -5'
5956 3' -56.4 NC_001806.1 + 144615 0.66 0.884362
Target:  5'- --aGCCGggGCGGCCAagGgGCGUCGGc -3'
miRNA:   3'- gucCGGCuuUGCCGGUa-CgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 145013 0.69 0.728706
Target:  5'- gGGGCCccacAACGGCCcgGCGCAUg-- -3'
miRNA:   3'- gUCCGGcu--UUGCCGGuaCGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 145728 0.66 0.862457
Target:  5'- -uGGCCGcgcgggugcGCGuGCCuuUGCACACCAa -3'
miRNA:   3'- guCCGGCuu-------UGC-CGGu-ACGUGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.