miRNA display CGI


Results 21 - 40 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 132188 0.66 0.884362
Target:  5'- uGGGCgCGccuGGCGGCCAUucGCgACACCc- -3'
miRNA:   3'- gUCCG-GCu--UUGCCGGUA--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 131866 0.75 0.387723
Target:  5'- cCAGGCCGucguGGCGGCCGccCGCGCCGc -3'
miRNA:   3'- -GUCCGGCu---UUGCCGGUacGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 131590 0.67 0.813176
Target:  5'- cCGGGCC----CGGCCAgGCACGgCAGc -3'
miRNA:   3'- -GUCCGGcuuuGCCGGUaCGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 129673 0.67 0.846796
Target:  5'- cCGGGCCGccGAGCGGCCcgucuccGgACGCCu- -3'
miRNA:   3'- -GUCCGGC--UUUGCCGGua-----CgUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 128516 0.67 0.83035
Target:  5'- -uGGCgugCGgcAUGGCCAUGCGgGCCGc -3'
miRNA:   3'- guCCG---GCuuUGCCGGUACGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 128311 0.7 0.678398
Target:  5'- uGGGUCGggGCcagcuccaucaGGCCGUGCACcugACgCAGa -3'
miRNA:   3'- gUCCGGCuuUG-----------CCGGUACGUG---UG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 128036 0.74 0.46786
Target:  5'- cCAGGCCGAcgaugcccguGGCGGCCAcgGCcC-CCAGg -3'
miRNA:   3'- -GUCCGGCU----------UUGCCGGUa-CGuGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 127896 0.68 0.764643
Target:  5'- aUAGGCgCGGGugcagcggagcACGGCCAUGCcgagggcaaaggcgGCgACCAGg -3'
miRNA:   3'- -GUCCG-GCUU-----------UGCCGGUACG--------------UG-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 125893 0.71 0.596339
Target:  5'- gGGGUuuuaCGAGGCGGCCAcGCAaaACCAGg -3'
miRNA:   3'- gUCCG----GCUUUGCCGGUaCGUg-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 122885 0.67 0.854728
Target:  5'- -cGGCCGAgaagAGCGGCgaGUGCucGCAgCAGu -3'
miRNA:   3'- guCCGGCU----UUGCCGg-UACG--UGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 121674 0.66 0.869976
Target:  5'- uGGGCCaAGAUGGCCcaGUGUACccuggcgguCCAGg -3'
miRNA:   3'- gUCCGGcUUUGCCGG--UACGUGu--------GGUC- -5'
5956 3' -56.4 NC_001806.1 + 118813 0.72 0.555694
Target:  5'- cCAGGUCGAAAUccagacucgGGCuCAUGC-CACCGGc -3'
miRNA:   3'- -GUCCGGCUUUG---------CCG-GUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 112852 0.66 0.884362
Target:  5'- -cGGUCauGGAACGguuuGCCGcGCACGCCGGg -3'
miRNA:   3'- guCCGG--CUUUGC----CGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 109242 0.69 0.728706
Target:  5'- gCGGGgCGGAAUccugGGCCccGgGCACCAGg -3'
miRNA:   3'- -GUCCgGCUUUG----CCGGuaCgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 108923 0.68 0.785271
Target:  5'- uCGGGCCGAGggacguACaGGCCGUgGCGCuguguguACCGGc -3'
miRNA:   3'- -GUCCGGCUU------UG-CCGGUA-CGUG-------UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 106757 0.7 0.668185
Target:  5'- gCGGGCCGAcAACGGCUccGCGCuggacGCCu- -3'
miRNA:   3'- -GUCCGGCU-UUGCCGGuaCGUG-----UGGuc -5'
5956 3' -56.4 NC_001806.1 + 105134 0.68 0.79534
Target:  5'- aCAGcuuuCgGggGCGGCCGUGcCGCcCCAGg -3'
miRNA:   3'- -GUCc---GgCuuUGCCGGUAC-GUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 102507 0.75 0.404747
Target:  5'- -cGGucCCGAucaccGCGGCCAgGCACGCCAGg -3'
miRNA:   3'- guCC--GGCUu----UGCCGGUaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 101977 0.68 0.767493
Target:  5'- --cGCCGGGuCGGCCcgGUACAgCGGa -3'
miRNA:   3'- gucCGGCUUuGCCGGuaCGUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 100774 0.66 0.862457
Target:  5'- -cGGCCucGGCGGCCAgucGCcGCGCCc- -3'
miRNA:   3'- guCCGGcuUUGCCGGUa--CG-UGUGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.