Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 99772 | 0.69 | 0.748305 |
Target: 5'- aGGGCCGGGugGGUCGuUGUugGuuCCGGu -3' miRNA: 3'- gUCCGGCUUugCCGGU-ACGugU--GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 94901 | 0.68 | 0.757955 |
Target: 5'- uCAGGCCaccacgccCGGCC-UGUACGCCAu -3' miRNA: 3'- -GUCCGGcuuu----GCCGGuACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 93494 | 0.69 | 0.748305 |
Target: 5'- gAGGCCGAGGCccuagucaGCCAacucgGCaACGCCGGg -3' miRNA: 3'- gUCCGGCUUUGc-------CGGUa----CG-UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 93290 | 0.71 | 0.627124 |
Target: 5'- gAGGgCGggGCGGCCGU---CGCCAGu -3' miRNA: 3'- gUCCgGCuuUGCCGGUAcguGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 92981 | 0.67 | 0.854728 |
Target: 5'- cCGGGCgCGuGGACGuCCAUGUuCGCCAGc -3' miRNA: 3'- -GUCCG-GC-UUUGCcGGUACGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 92920 | 0.68 | 0.804336 |
Target: 5'- gCAGGgCGggGCgGGCC-UGgAgGCCGGg -3' miRNA: 3'- -GUCCgGCuuUG-CCGGuACgUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 91163 | 0.7 | 0.698699 |
Target: 5'- aGGGCCaGGAcACGGCCGcgGCccGCGCCAa -3' miRNA: 3'- gUCCGG-CUU-UGCCGGUa-CG--UGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 91007 | 0.66 | 0.884362 |
Target: 5'- gCGGGCgCGAcggcGGCGGCaaggGCGCGgCGGg -3' miRNA: 3'- -GUCCG-GCU----UUGCCGgua-CGUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 89791 | 0.76 | 0.363087 |
Target: 5'- gGGGCUGggGCGGaCCG-GCACGCCc- -3' miRNA: 3'- gUCCGGCuuUGCC-GGUaCGUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 88979 | 0.68 | 0.776909 |
Target: 5'- aCAGGCgCGAGcgccGCGGCCAgaaGC-CGCCc- -3' miRNA: 3'- -GUCCG-GCUU----UGCCGGUa--CGuGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 88673 | 0.74 | 0.46786 |
Target: 5'- aGGGCC---GCGGCCAUGCGCuCgCAGa -3' miRNA: 3'- gUCCGGcuuUGCCGGUACGUGuG-GUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 84239 | 0.7 | 0.668185 |
Target: 5'- -cGuGCUGAAacACGGCCGggggcgcggGCGCACCGGc -3' miRNA: 3'- guC-CGGCUU--UGCCGGUa--------CGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 82864 | 0.66 | 0.877279 |
Target: 5'- gGGGUcauauccuCGAaccaGACGGCCGcgucaUGCGCGCCGu -3' miRNA: 3'- gUCCG--------GCU----UUGCCGGU-----ACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 81344 | 0.7 | 0.668185 |
Target: 5'- gCGGGCCGcaaccAGGCGGCCGggGCGuCGCCc- -3' miRNA: 3'- -GUCCGGC-----UUUGCCGGUa-CGU-GUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 81061 | 0.66 | 0.893899 |
Target: 5'- --cGCCGGgcgcugcuucaucacAGCGacGCCGUGCugACCAGc -3' miRNA: 3'- gucCGGCU---------------UUGC--CGGUACGugUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 79531 | 0.7 | 0.64768 |
Target: 5'- -cGGCCGAAagcacGCGGCCG-GCGC-CCGu -3' miRNA: 3'- guCCGGCUU-----UGCCGGUaCGUGuGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 79490 | 0.67 | 0.854728 |
Target: 5'- uGGGCCGGcagucACGGCUcgcgaaGCACgACCGGg -3' miRNA: 3'- gUCCGGCUu----UGCCGGua----CGUG-UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 78785 | 0.66 | 0.884362 |
Target: 5'- gCGGGCCGGAcGCcGCCuUGCGCgauGCCGu -3' miRNA: 3'- -GUCCGGCUU-UGcCGGuACGUG---UGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 77375 | 0.66 | 0.869976 |
Target: 5'- aCAGGCC-AGACGGgCGcggGCGCGgCGGc -3' miRNA: 3'- -GUCCGGcUUUGCCgGUa--CGUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 76486 | 0.68 | 0.803444 |
Target: 5'- -uGGCCGAuaccaagGACGccGUgGUGCGCGCCAa -3' miRNA: 3'- guCCGGCU-------UUGC--CGgUACGUGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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