miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 75996 0.67 0.83035
Target:  5'- gGGGCC---GCGGCCGacacGUACGCCGa -3'
miRNA:   3'- gUCCGGcuuUGCCGGUa---CGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 75718 0.66 0.89122
Target:  5'- uGGGCCGccGACguggaGGCCGUGCugGaCCGc -3'
miRNA:   3'- gUCCGGCu-UUG-----CCGGUACGugU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 75520 0.66 0.862457
Target:  5'- gCGGGCCacGAGggcagguucgGgGGCCuguUGCACGCCGa -3'
miRNA:   3'- -GUCCGG--CUU----------UgCCGGu--ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 75477 0.66 0.890544
Target:  5'- cCAGGCCGcGACGcGCgcgaccaCcgGCGCGCgGGa -3'
miRNA:   3'- -GUCCGGCuUUGC-CG-------GuaCGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 75245 0.66 0.884362
Target:  5'- -uGGUCGAcgcgguGACGGCCcuggGCGCggccGCCAGc -3'
miRNA:   3'- guCCGGCU------UUGCCGGua--CGUG----UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 75212 0.72 0.575936
Target:  5'- -cGGUgGAuGCGGCCGUGCgggcGCACCGc -3'
miRNA:   3'- guCCGgCUuUGCCGGUACG----UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 73992 0.72 0.555694
Target:  5'- -cGGCCGggGCGGCCccGCagggggcuccGCGCCc- -3'
miRNA:   3'- guCCGGCuuUGCCGGuaCG----------UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 73940 0.76 0.355119
Target:  5'- gGGGUCGAcGCGGUCucacaGCACGCCGGg -3'
miRNA:   3'- gUCCGGCUuUGCCGGua---CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 73454 0.76 0.355119
Target:  5'- cCAGGCCGGggUGGCCGgcccgGC-CGCCGc -3'
miRNA:   3'- -GUCCGGCUuuGCCGGUa----CGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 71692 0.7 0.668185
Target:  5'- aCAGGCCGGGucucUGGCCAgcaggGCACAUa-- -3'
miRNA:   3'- -GUCCGGCUUu---GCCGGUa----CGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 71341 0.67 0.846796
Target:  5'- gAGGCCuauGGGcACGGCC---CACGCCAGg -3'
miRNA:   3'- gUCCGG---CUU-UGCCGGuacGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 68276 0.71 0.637404
Target:  5'- -uGGCC---ACGGCCAagcUGCGCGCCGc -3'
miRNA:   3'- guCCGGcuuUGCCGGU---ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 67793 0.68 0.804336
Target:  5'- -uGGCCGAc-UGGCCcgGCGCGuCCGu -3'
miRNA:   3'- guCCGGCUuuGCCGGuaCGUGU-GGUc -5'
5956 3' -56.4 NC_001806.1 + 66822 0.7 0.657943
Target:  5'- gGGGCCGgcccGggUGGCCGgUGUGCGCCGc -3'
miRNA:   3'- gUCCGGC----UuuGCCGGU-ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 64134 0.66 0.869976
Target:  5'- cCAGGgCGAugUGGCgCAUGcCGCGCguGg -3'
miRNA:   3'- -GUCCgGCUuuGCCG-GUAC-GUGUGguC- -5'
5956 3' -56.4 NC_001806.1 + 63131 0.74 0.431147
Target:  5'- gCAGGCCGuguGCaGGCCcUGCAUGCCGa -3'
miRNA:   3'- -GUCCGGCuu-UG-CCGGuACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 62838 0.76 0.371177
Target:  5'- --cGCCGAGGCGGCgGUGgGCAUCAGc -3'
miRNA:   3'- gucCGGCUUUGCCGgUACgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 61953 0.66 0.869976
Target:  5'- aCAGGCCGGAGaGGCCGcccagGUuuuccguaACCAGg -3'
miRNA:   3'- -GUCCGGCUUUgCCGGUa----CGug------UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 57048 0.66 0.884362
Target:  5'- gGGGCCGggGCccccGGC--UGCGUGCCGGg -3'
miRNA:   3'- gUCCGGCuuUG----CCGguACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 56849 0.68 0.757955
Target:  5'- -cGGCCaGGGCGGCCGcgGCGggcccaccgaucCACCAGa -3'
miRNA:   3'- guCCGGcUUUGCCGGUa-CGU------------GUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.