miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 55024 0.68 0.786194
Target:  5'- gUAGGC---GGCGGCCGUGCACgucGCCu- -3'
miRNA:   3'- -GUCCGgcuUUGCCGGUACGUG---UGGuc -5'
5956 3' -56.4 NC_001806.1 + 54722 0.68 0.786194
Target:  5'- gGGGaCGcAGCcGGCCGUGCAgACCAc -3'
miRNA:   3'- gUCCgGCuUUG-CCGGUACGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 54651 0.73 0.486811
Target:  5'- uGGGCCGuAACGGCCGacuuaGC-CGCCGGu -3'
miRNA:   3'- gUCCGGCuUUGCCGGUa----CGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 51790 0.81 0.181768
Target:  5'- gGGGCCGugGCGGCCAaGUACGCCGc -3'
miRNA:   3'- gUCCGGCuuUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 51393 0.68 0.786194
Target:  5'- gGGGCUccuuagcGCGGCCGUGgGCGCCu- -3'
miRNA:   3'- gUCCGGcuu----UGCCGGUACgUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 51232 0.67 0.854728
Target:  5'- gCGGGucCCGAccgAACGGgcgucaCCAUGCAgCGCCGGa -3'
miRNA:   3'- -GUCC--GGCU---UUGCC------GGUACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 50667 0.76 0.371177
Target:  5'- cCGGcGCCGGgacgacgcGGCGGCCAcGCGCGCCAu -3'
miRNA:   3'- -GUC-CGGCU--------UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 50098 0.69 0.728706
Target:  5'- gGGGCC---GCGGCCGUGCcguuacugaGCGCgGGg -3'
miRNA:   3'- gUCCGGcuuUGCCGGUACG---------UGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 49371 0.66 0.877279
Target:  5'- cCGGGcCCGAuGCGGCCcguagccagucgGUGCGCggucGCCuGg -3'
miRNA:   3'- -GUCC-GGCUuUGCCGG------------UACGUG----UGGuC- -5'
5956 3' -56.4 NC_001806.1 + 46435 0.74 0.431147
Target:  5'- -cGGUCGGgcgccuGGCGGCCAUGCAUGCcCGGa -3'
miRNA:   3'- guCCGGCU------UUGCCGGUACGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 46142 0.73 0.486811
Target:  5'- uGGGuCCGGAGgGGCCGgacGCACACCc- -3'
miRNA:   3'- gUCC-GGCUUUgCCGGUa--CGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 43502 0.71 0.606584
Target:  5'- gGGGCCGugGCGGCCcaucaggacaagAUGCgGCGCCuGg -3'
miRNA:   3'- gUCCGGCuuUGCCGG------------UACG-UGUGGuC- -5'
5956 3' -56.4 NC_001806.1 + 40863 0.81 0.181768
Target:  5'- gGGGCgGGGACGGgCAUGCACACCc- -3'
miRNA:   3'- gUCCGgCUUUGCCgGUACGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 38604 0.66 0.869976
Target:  5'- -uGGuuGGAacACGGC--UGCACACCAc -3'
miRNA:   3'- guCCggCUU--UGCCGguACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 38513 0.69 0.738552
Target:  5'- gGGGCUGGGgugucggauAUGGCCucugguggugGCGCACCGGu -3'
miRNA:   3'- gUCCGGCUU---------UGCCGGua--------CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 36383 0.67 0.846796
Target:  5'- ---cCCGAcgcuaAACGGCCGcGCACACCGc -3'
miRNA:   3'- guccGGCU-----UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 36206 0.7 0.678398
Target:  5'- --uGCCGcgcGGGCGGCCAUGC-CGCUGGa -3'
miRNA:   3'- gucCGGC---UUUGCCGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 34533 0.66 0.880139
Target:  5'- gCGGGCCGGGccgcucguaagagccGCGaCCcgGC-CGCCGGg -3'
miRNA:   3'- -GUCCGGCUU---------------UGCcGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 34411 0.68 0.786194
Target:  5'- cCGGGCCGGGcCgGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGCUUuG-CCGGuaC-GUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 34290 0.69 0.738552
Target:  5'- gGGGCgGGAugggguuuaGCGGCgGggggcgGCGCGCCGGa -3'
miRNA:   3'- gUCCGgCUU---------UGCCGgUa-----CGUGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.