Results 101 - 120 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 30916 | 0.67 | 0.853944 |
Target: 5'- gGGGCCGuccccgcGGGCGGCCuacGCGCuACCu- -3' miRNA: 3'- gUCCGGC-------UUUGCCGGua-CGUG-UGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 30636 | 0.71 | 0.596339 |
Target: 5'- aGGGCCGGGggggcGCGGCCAgggUGgGC-CCGGg -3' miRNA: 3'- gUCCGGCUU-----UGCCGGU---ACgUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 30292 | 0.66 | 0.893899 |
Target: 5'- gGGGCgGAGcCGGCCGcccgccccgcggacGCGCGCCGu -3' miRNA: 3'- gUCCGgCUUuGCCGGUa-------------CGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 29446 | 0.69 | 0.718776 |
Target: 5'- gAGGCCGAGGaGGCCGUcagggcggGCACGgCCGu -3' miRNA: 3'- gUCCGGCUUUgCCGGUA--------CGUGU-GGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 28185 | 0.67 | 0.846796 |
Target: 5'- gGGGCCG-GGC-GCCAUGUcugggGCGCCAu -3' miRNA: 3'- gUCCGGCuUUGcCGGUACG-----UGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 27796 | 0.7 | 0.64768 |
Target: 5'- gGGGCCG----GGCCGUGCAUGCUAa -3' miRNA: 3'- gUCCGGCuuugCCGGUACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 27261 | 0.67 | 0.813176 |
Target: 5'- gGGGgCGGGACuGGCCAaucgGCGgcCGCCAGc -3' miRNA: 3'- gUCCgGCUUUG-CCGGUa---CGU--GUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 27034 | 0.75 | 0.37939 |
Target: 5'- gAGGCCGAGGCGGUCAU-CGgGCCGu -3' miRNA: 3'- gUCCGGCUUUGCCGGUAcGUgUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 26997 | 0.7 | 0.698699 |
Target: 5'- gCGGGCCGAccgGGCUcgGUuccgGCGCCGGg -3' miRNA: 3'- -GUCCGGCUuugCCGGuaCG----UGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24848 | 0.71 | 0.616849 |
Target: 5'- aCGGGCCGcAGCGGCacCGUGCugGCg-- -3' miRNA: 3'- -GUCCGGCuUUGCCG--GUACGugUGguc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24673 | 0.73 | 0.525743 |
Target: 5'- gGGGCgCGAGGCGGU---GCGCGCCGGc -3' miRNA: 3'- gUCCG-GCUUUGCCGguaCGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24551 | 0.67 | 0.83035 |
Target: 5'- uCGGGgaccaCCGAcgccAugGcGCCcgGCGCGCCGGa -3' miRNA: 3'- -GUCC-----GGCU----UugC-CGGuaCGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 24012 | 0.69 | 0.718776 |
Target: 5'- -uGGCC-AAcCGGCUGUGCGgGCCGGa -3' miRNA: 3'- guCCGGcUUuGCCGGUACGUgUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23806 | 0.68 | 0.79534 |
Target: 5'- gGGGCCGccucuuUGGCCcccUGCGCGCCu- -3' miRNA: 3'- gUCCGGCuuu---GCCGGu--ACGUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23468 | 0.69 | 0.732655 |
Target: 5'- cCGGGCCGccgcggcgcAGGCccgcccgcgccccguGGCCGUGuCGCGCCGGc -3' miRNA: 3'- -GUCCGGC---------UUUG---------------CCGGUAC-GUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23212 | 0.77 | 0.295881 |
Target: 5'- -uGGCgGcgGCGGCCA-GCGCACCGGa -3' miRNA: 3'- guCCGgCuuUGCCGGUaCGUGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 23067 | 0.77 | 0.317154 |
Target: 5'- gAGGCCGccguGGCcGCCGUGCGCGCCGu -3' miRNA: 3'- gUCCGGCu---UUGcCGGUACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 22884 | 0.68 | 0.757955 |
Target: 5'- gGGGCUGGccGgGGCCcgGCcCGCCAGc -3' miRNA: 3'- gUCCGGCUu-UgCCGGuaCGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 22176 | 0.67 | 0.83035 |
Target: 5'- gGGcGCCccGGCGGCCGUGUggGCGCCc- -3' miRNA: 3'- gUC-CGGcuUUGCCGGUACG--UGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 21622 | 0.68 | 0.776909 |
Target: 5'- -cGGCCGGuGGCGGCCAUcgGCGuCAUCGa -3' miRNA: 3'- guCCGGCU-UUGCCGGUA--CGU-GUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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