miRNA display CGI


Results 121 - 140 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 20411 0.77 0.309937
Target:  5'- gGGGCCcgGGGACGGCCAacggGCGCGCgGGg -3'
miRNA:   3'- gUCCGG--CUUUGCCGGUa---CGUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 20187 0.68 0.79534
Target:  5'- gGGGCCGgcGCGGaguCggGCACggcGCCAGu -3'
miRNA:   3'- gUCCGGCuuUGCCg--GuaCGUG---UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 13605 0.66 0.869976
Target:  5'- gGGGCUGGAACgGGUCcgGUAgGCCc- -3'
miRNA:   3'- gUCCGGCUUUG-CCGGuaCGUgUGGuc -5'
5956 3' -56.4 NC_001806.1 + 11930 0.71 0.586121
Target:  5'- aUAGGCCGA----GCCGuUGUACGCCAGa -3'
miRNA:   3'- -GUCCGGCUuugcCGGU-ACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 10727 0.74 0.458528
Target:  5'- gCGGGaCCGGAGC-GCgCAUGCACGCCGc -3'
miRNA:   3'- -GUCC-GGCUUUGcCG-GUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 10699 0.68 0.757955
Target:  5'- gGGGCCGggGgGGC---GUACGCCAu -3'
miRNA:   3'- gUCCGGCuuUgCCGguaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 10504 0.76 0.339557
Target:  5'- gGGGUCGGAACuggGGCCGguUGCAcCACCAGg -3'
miRNA:   3'- gUCCGGCUUUG---CCGGU--ACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 9160 0.67 0.846796
Target:  5'- aGGGCCaucgggGAgacAACGGCCGUGUAgcCCGGg -3'
miRNA:   3'- gUCCGG------CU---UUGCCGGUACGUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 6794 0.71 0.637404
Target:  5'- -cGGCCaGAACcGCCGUGCACGacCCGGa -3'
miRNA:   3'- guCCGGcUUUGcCGGUACGUGU--GGUC- -5'
5956 3' -56.4 NC_001806.1 + 4822 0.66 0.869976
Target:  5'- gGGGuCCGggGCGGCgAgGC-CGCgGGg -3'
miRNA:   3'- gUCC-GGCuuUGCCGgUaCGuGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 4743 0.66 0.862457
Target:  5'- cCGGGCCGG---GGCCcgGU-CGCCGGc -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4666 0.66 0.867742
Target:  5'- uGGGCCGGcgggcgcggcgacaGGCGGuCCGUGgGguCCGGa -3'
miRNA:   3'- gUCCGGCU--------------UUGCC-GGUACgUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4137 0.68 0.776909
Target:  5'- gAGGCCcGGGCGGCUGU-CGC-CCAGg -3'
miRNA:   3'- gUCCGGcUUUGCCGGUAcGUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3819 0.73 0.496421
Target:  5'- cCAGGCCccagccGAAGCGGCCG-GC-CGCCAu -3'
miRNA:   3'- -GUCCGG------CUUUGCCGGUaCGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 3447 0.67 0.846796
Target:  5'- cCAGGCaCucGACGGCCAcGCG-GCCGGc -3'
miRNA:   3'- -GUCCG-GcuUUGCCGGUaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3359 0.72 0.545649
Target:  5'- gCGGGCCGGGcccCGGCCAgccccgggacgGC-CGCCAGg -3'
miRNA:   3'- -GUCCGGCUUu--GCCGGUa----------CGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3183 0.67 0.813176
Target:  5'- -cGGCCacGGCGGCCucgcUGC-CGCCGGc -3'
miRNA:   3'- guCCGGcuUUGCCGGu---ACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 2926 0.71 0.627124
Target:  5'- gCGGGCCGccgccuccGGGCGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGC--------UUUGCCGGuaC-GUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 2783 0.69 0.728706
Target:  5'- --cGCCGcgGCGGCCcgGgGCGCCGc -3'
miRNA:   3'- gucCGGCuuUGCCGGuaCgUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 2742 0.68 0.776909
Target:  5'- gCGGGCCGGcgcgacACGGCCAcgGgGCGCgGGc -3'
miRNA:   3'- -GUCCGGCUu-----UGCCGGUa-CgUGUGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.