Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 134299 | 0.66 | 0.890544 |
Target: 5'- aGGGCCGAGagaacggGgGGCgGguUGUugGCCAGc -3' miRNA: 3'- gUCCGGCUU-------UgCCGgU--ACGugUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 75718 | 0.66 | 0.89122 |
Target: 5'- uGGGCCGccGACguggaGGCCGUGCugGaCCGc -3' miRNA: 3'- gUCCGGCu-UUG-----CCGGUACGugU-GGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 135974 | 0.66 | 0.89122 |
Target: 5'- gAGGCgCGAGGCGGCCG---AC-CCGGc -3' miRNA: 3'- gUCCG-GCUUUGCCGGUacgUGuGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 147757 | 0.66 | 0.89122 |
Target: 5'- gCGGGucCCGAcGCGGCCGcGgACGCgGGg -3' miRNA: 3'- -GUCC--GGCUuUGCCGGUaCgUGUGgUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 30292 | 0.66 | 0.893899 |
Target: 5'- gGGGCgGAGcCGGCCGcccgccccgcggacGCGCGCCGu -3' miRNA: 3'- gUCCGgCUUuGCCGGUa-------------CGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 34533 | 0.66 | 0.880139 |
Target: 5'- gCGGGCCGGGccgcucguaagagccGCGaCCcgGC-CGCCGGg -3' miRNA: 3'- -GUCCGGCUU---------------UGCcGGuaCGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 49371 | 0.66 | 0.877279 |
Target: 5'- cCGGGcCCGAuGCGGCCcguagccagucgGUGCGCggucGCCuGg -3' miRNA: 3'- -GUCC-GGCUuUGCCGG------------UACGUG----UGGuC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 75520 | 0.66 | 0.862457 |
Target: 5'- gCGGGCCacGAGggcagguucgGgGGCCuguUGCACGCCGa -3' miRNA: 3'- -GUCCGG--CUU----------UgCCGGu--ACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 100774 | 0.66 | 0.862457 |
Target: 5'- -cGGCCucGGCGGCCAgucGCcGCGCCc- -3' miRNA: 3'- guCCGGcuUUGCCGGUa--CG-UGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 4666 | 0.66 | 0.867742 |
Target: 5'- uGGGCCGGcgggcgcggcgacaGGCGGuCCGUGgGguCCGGa -3' miRNA: 3'- gUCCGGCU--------------UUGCC-GGUACgUguGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 4822 | 0.66 | 0.869976 |
Target: 5'- gGGGuCCGggGCGGCgAgGC-CGCgGGg -3' miRNA: 3'- gUCC-GGCuuUGCCGgUaCGuGUGgUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 61953 | 0.66 | 0.869976 |
Target: 5'- aCAGGCCGGAGaGGCCGcccagGUuuuccguaACCAGg -3' miRNA: 3'- -GUCCGGCUUUgCCGGUa----CGug------UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 77375 | 0.66 | 0.869976 |
Target: 5'- aCAGGCC-AGACGGgCGcggGCGCGgCGGc -3' miRNA: 3'- -GUCCGGcUUUGCCgGUa--CGUGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 121674 | 0.66 | 0.869976 |
Target: 5'- uGGGCCaAGAUGGCCcaGUGUACccuggcgguCCAGg -3' miRNA: 3'- gUCCGGcUUUGCCGG--UACGUGu--------GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2221 | 0.66 | 0.869976 |
Target: 5'- -cGGCCGugucCGGCCc-GCACAgCCGGu -3' miRNA: 3'- guCCGGCuuu-GCCGGuaCGUGU-GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2402 | 0.66 | 0.869976 |
Target: 5'- cCAGGCCGccauGCGGCgCA-GCGgGCCc- -3' miRNA: 3'- -GUCCGGCuu--UGCCG-GUaCGUgUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 13605 | 0.66 | 0.869976 |
Target: 5'- gGGGCUGGAACgGGUCcgGUAgGCCc- -3' miRNA: 3'- gUCCGGCUUUG-CCGGuaCGUgUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 38604 | 0.66 | 0.869976 |
Target: 5'- -uGGuuGGAacACGGC--UGCACACCAc -3' miRNA: 3'- guCCggCUU--UGCCGguACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 64134 | 0.66 | 0.869976 |
Target: 5'- cCAGGgCGAugUGGCgCAUGcCGCGCguGg -3' miRNA: 3'- -GUCCgGCUuuGCCG-GUAC-GUGUGguC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 82864 | 0.66 | 0.877279 |
Target: 5'- gGGGUcauauccuCGAaccaGACGGCCGcgucaUGCGCGCCGu -3' miRNA: 3'- gUCCG--------GCU----UUGCCGGU-----ACGUGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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