miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 3447 0.67 0.846796
Target:  5'- cCAGGCaCucGACGGCCAcGCG-GCCGGc -3'
miRNA:   3'- -GUCCG-GcuUUGCCGGUaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 71341 0.67 0.846796
Target:  5'- gAGGCCuauGGGcACGGCC---CACGCCAGg -3'
miRNA:   3'- gUCCGG---CUU-UGCCGGuacGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1641 0.67 0.837844
Target:  5'- gCAGGCggcgugCGAGugGGCCuccuccucgcagaAguccgGCGCGCCGGg -3'
miRNA:   3'- -GUCCG------GCUUugCCGG-------------Ua----CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 24551 0.67 0.83035
Target:  5'- uCGGGgaccaCCGAcgccAugGcGCCcgGCGCGCCGGa -3'
miRNA:   3'- -GUCC-----GGCU----UugC-CGGuaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 132357 0.67 0.83035
Target:  5'- uGGGCCu--GCGGCCAcGCggGCACCc- -3'
miRNA:   3'- gUCCGGcuuUGCCGGUaCG--UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 128516 0.67 0.83035
Target:  5'- -uGGCgugCGgcAUGGCCAUGCGgGCCGc -3'
miRNA:   3'- guCCG---GCuuUGCCGGUACGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 75996 0.67 0.83035
Target:  5'- gGGGCC---GCGGCCGacacGUACGCCGa -3'
miRNA:   3'- gUCCGGcuuUGCCGGUa---CGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 30916 0.67 0.853944
Target:  5'- gGGGCCGuccccgcGGGCGGCCuacGCGCuACCu- -3'
miRNA:   3'- gUCCGGC-------UUUGCCGGua-CGUG-UGGuc -5'
5956 3' -56.4 NC_001806.1 + 36383 0.67 0.846796
Target:  5'- ---cCCGAcgcuaAACGGCCGcGCACACCGc -3'
miRNA:   3'- guccGGCU-----UUGCCGGUaCGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 51232 0.67 0.854728
Target:  5'- gCGGGucCCGAccgAACGGgcgucaCCAUGCAgCGCCGGa -3'
miRNA:   3'- -GUCC--GGCU---UUGCC------GGUACGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 4666 0.66 0.867742
Target:  5'- uGGGCCGGcgggcgcggcgacaGGCGGuCCGUGgGguCCGGa -3'
miRNA:   3'- gUCCGGCU--------------UUGCC-GGUACgUguGGUC- -5'
5956 3' -56.4 NC_001806.1 + 100774 0.66 0.862457
Target:  5'- -cGGCCucGGCGGCCAgucGCcGCGCCc- -3'
miRNA:   3'- guCCGGcuUUGCCGGUa--CG-UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 75520 0.66 0.862457
Target:  5'- gCGGGCCacGAGggcagguucgGgGGCCuguUGCACGCCGa -3'
miRNA:   3'- -GUCCGG--CUU----------UgCCGGu--ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 4743 0.66 0.862457
Target:  5'- cCGGGCCGG---GGCCcgGU-CGCCGGc -3'
miRNA:   3'- -GUCCGGCUuugCCGGuaCGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 145728 0.66 0.862457
Target:  5'- -uGGCCGcgcgggugcGCGuGCCuuUGCACACCAa -3'
miRNA:   3'- guCCGGCuu-------UGC-CGGu-ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 92981 0.67 0.854728
Target:  5'- cCGGGCgCGuGGACGuCCAUGUuCGCCAGc -3'
miRNA:   3'- -GUCCG-GC-UUUGCcGGUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 1463 0.67 0.854728
Target:  5'- cCGGGCCGucguCGucGCCGcGCAgCACCAGc -3'
miRNA:   3'- -GUCCGGCuuu-GC--CGGUaCGU-GUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 136534 0.67 0.854728
Target:  5'- aCGGGCCGcucGGGCcGCCcgGCGCAaagCAGg -3'
miRNA:   3'- -GUCCGGC---UUUGcCGGuaCGUGUg--GUC- -5'
5956 3' -56.4 NC_001806.1 + 122885 0.67 0.854728
Target:  5'- -cGGCCGAgaagAGCGGCgaGUGCucGCAgCAGu -3'
miRNA:   3'- guCCGGCU----UUGCCGg-UACG--UGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 79490 0.67 0.854728
Target:  5'- uGGGCCGGcagucACGGCUcgcgaaGCACgACCGGg -3'
miRNA:   3'- gUCCGGCUu----UGCCGGua----CGUG-UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.