Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5956 | 3' | -56.4 | NC_001806.1 | + | 121674 | 0.66 | 0.869976 |
Target: 5'- uGGGCCaAGAUGGCCcaGUGUACccuggcgguCCAGg -3' miRNA: 3'- gUCCGGcUUUGCCGG--UACGUGu--------GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2221 | 0.66 | 0.869976 |
Target: 5'- -cGGCCGugucCGGCCc-GCACAgCCGGu -3' miRNA: 3'- guCCGGCuuu-GCCGGuaCGUGU-GGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 2402 | 0.66 | 0.869976 |
Target: 5'- cCAGGCCGccauGCGGCgCA-GCGgGCCc- -3' miRNA: 3'- -GUCCGGCuu--UGCCG-GUaCGUgUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 13605 | 0.66 | 0.869976 |
Target: 5'- gGGGCUGGAACgGGUCcgGUAgGCCc- -3' miRNA: 3'- gUCCGGCUUUG-CCGGuaCGUgUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 38604 | 0.66 | 0.869976 |
Target: 5'- -uGGuuGGAacACGGC--UGCACACCAc -3' miRNA: 3'- guCCggCUU--UGCCGguACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 64134 | 0.66 | 0.869976 |
Target: 5'- cCAGGgCGAugUGGCgCAUGcCGCGCguGg -3' miRNA: 3'- -GUCCgGCUuuGCCG-GUAC-GUGUGguC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 4666 | 0.66 | 0.867742 |
Target: 5'- uGGGCCGGcgggcgcggcgacaGGCGGuCCGUGgGguCCGGa -3' miRNA: 3'- gUCCGGCU--------------UUGCC-GGUACgUguGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 145728 | 0.66 | 0.862457 |
Target: 5'- -uGGCCGcgcgggugcGCGuGCCuuUGCACACCAa -3' miRNA: 3'- guCCGGCuu-------UGC-CGGu-ACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 4743 | 0.66 | 0.862457 |
Target: 5'- cCGGGCCGG---GGCCcgGU-CGCCGGc -3' miRNA: 3'- -GUCCGGCUuugCCGGuaCGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 75520 | 0.66 | 0.862457 |
Target: 5'- gCGGGCCacGAGggcagguucgGgGGCCuguUGCACGCCGa -3' miRNA: 3'- -GUCCGG--CUU----------UgCCGGu--ACGUGUGGUc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 100774 | 0.66 | 0.862457 |
Target: 5'- -cGGCCucGGCGGCCAgucGCcGCGCCc- -3' miRNA: 3'- guCCGGcuUUGCCGGUa--CG-UGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 51232 | 0.67 | 0.854728 |
Target: 5'- gCGGGucCCGAccgAACGGgcgucaCCAUGCAgCGCCGGa -3' miRNA: 3'- -GUCC--GGCU---UUGCC------GGUACGU-GUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 79490 | 0.67 | 0.854728 |
Target: 5'- uGGGCCGGcagucACGGCUcgcgaaGCACgACCGGg -3' miRNA: 3'- gUCCGGCUu----UGCCGGua----CGUG-UGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 122885 | 0.67 | 0.854728 |
Target: 5'- -cGGCCGAgaagAGCGGCgaGUGCucGCAgCAGu -3' miRNA: 3'- guCCGGCU----UUGCCGg-UACG--UGUgGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 136534 | 0.67 | 0.854728 |
Target: 5'- aCGGGCCGcucGGGCcGCCcgGCGCAaagCAGg -3' miRNA: 3'- -GUCCGGC---UUUGcCGGuaCGUGUg--GUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 1463 | 0.67 | 0.854728 |
Target: 5'- cCGGGCCGucguCGucGCCGcGCAgCACCAGc -3' miRNA: 3'- -GUCCGGCuuu-GC--CGGUaCGU-GUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 92981 | 0.67 | 0.854728 |
Target: 5'- cCGGGCgCGuGGACGuCCAUGUuCGCCAGc -3' miRNA: 3'- -GUCCG-GC-UUUGCcGGUACGuGUGGUC- -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 30916 | 0.67 | 0.853944 |
Target: 5'- gGGGCCGuccccgcGGGCGGCCuacGCGCuACCu- -3' miRNA: 3'- gUCCGGC-------UUUGCCGGua-CGUG-UGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 129673 | 0.67 | 0.846796 |
Target: 5'- cCGGGCCGccGAGCGGCCcgucuccGgACGCCu- -3' miRNA: 3'- -GUCCGGC--UUUGCCGGua-----CgUGUGGuc -5' |
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5956 | 3' | -56.4 | NC_001806.1 | + | 28185 | 0.67 | 0.846796 |
Target: 5'- gGGGCCG-GGC-GCCAUGUcugggGCGCCAu -3' miRNA: 3'- gUCCGGCuUUGcCGGUACG-----UGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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